Glyma04g34150 - SoyBase

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Report for Sequence Feature Glyma04g34150

Feature Type:	gene_model
Chromosome:	Gm04
Start:	40144241
stop:	40151603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g34150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74690	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 31 \| chr1:28061498-28063924 REVERSE LENGTH=587	SoyBase	E_val: 1.00E-117	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF187	Panther		JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_B7FLN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=4 Tax=Medicago truncatula RepID=B7FLN4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JWY1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWY1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g34150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g34150

Paralog	Evidence	Comments
Glyma06g20341	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g34150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g173100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g34150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g34150

Limit To All Plant Sequences

>Glyma04g34150.4   sequence type=transcript   gene model=Glyma04g34150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCAAGCTTTTTTTCAGTTTTGGTTTCAGTTTATACATTAGTTGTTGTTGTTTTTATTATTTTTCAAAAATTGTAACTTTCACTCTCTCTCAGAGAATGATGACAGCATGCAAATGCATCATCAAACAACTAATAAATTGATGAAGCCTTAGGTCACATTTTACTTTCTCAGTTCTCATTATTTTCAGTTTCACTCTCTCTTCTCTTCCATGGAATCGTAAGATTTGAGGACAAGAGCTTCCACGTTTATCAGGTTGTGATCTCAAAATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAAGTGAGGGAAACCTGGTTTTCAGGTATTGAACACGAGGAGGTTGAAAATTGTGTGGGGTCGTCTTTGATTAAAGTTGCTGAAATCATAGGACCATTGTATGAGCTGGTTTGATCAGCTTATTTTCCCTGAATTCTGGGTTGTGAGTTGTACAATATAGGTTTTAAGTTTTGCATGCTGCAACTTTTAATGTCTTATGTTCTGTTTGTCTCTGGCATGATTCCTTGTCTGTCCATATTGTACCTTATCTGTGTTCCCCAAACTTCCGTGTTTGGACAAGTATGATCTGGTAACACGAATACTTTCACACAAGATTTCTTCGGCCTTCAGAAAATTTCTTTTGGCATTTCAACTCTTCAGGTGCGTAGTGGAGGATAGATCTTATTGTAGTGTCTAGCTAGTGTAACGACAAAAAATATCACTAAACACAGTGACTTGCTGAATAATACGATCTGCCCTTATTTAGTAATACAGAGACTGATATCAGTGTAGCAGCAGAAGTAACAAAGAATGAAGGAAACCTAAAGGGTGATATTGCTTATTGTTTGCTGGGTGGGAGGTTTCTTCCATAAACCATTTTAATTGGAGTGAAGCACTAACTAGTATGAAAAGTAGTGTTGTATTGTACGAATATTCTGTCCTTGTTAAGCACTTGGACCAACTTCTAGGATTTTGGAATGTAAAGCATATTAAATACAATTTAAGGCACTATTTTGGTTCTTATGGAAGATTAAAAGTGG

Coding sequences of Glyma04g34150

Limit To All Plant Sequences

>Glyma04g34150.3   sequence type=CDS   gene model=Glyma04g34150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAA

>Glyma04g34150.4   sequence type=CDS   gene model=Glyma04g34150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAATCACCAGGAAAATGGATCAAGACCGTACTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGAAGAGAGAAGTTTGTTAATAAAAAAGAAGCAGTGGTTTCTTCCAACGAGTTGGAAAATGGTTTGTCTTTAGATCCAACCCCCGATGAGATTGCTACAAATGAGGAGGACCATGAACTGGAGAATGAAGAATCAGAAAATATTTTACCTGACAATCAAGAAAGAGACATTATTGGATCTGTTGACCCGGATGCACCACCTGATCCAGAGAAAATCAGGCTGGAGCAAGCAGCATCAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCACGAAGGGCATTTAGGGCCCTGAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAAACAAGCCGTTGTTACATTATGCTGCATGTATGGAATTGTAAAGTTACAAGCACTTGTCCGTGGAGGAAGGATTAGACAGTCTAATGACTTCCATGAGAAGTGCAATCTATTTAAGCCTCTGGATGCAAAACTTGGTGAGCCAGTTGGTATCTCCACAAAAATTTCAAAGCTGACTGCAAATACTTTCATCCATAAGCTTCTTGCTTCATCAATTACAATAATGGCACTGCAACTGCAATATGTTAATGGAGATCCAAATTCAGTCTTAAGTTGGTTGGAGCGCTGGTCAGCATCTTACTTTTGGAAACCAGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATGTTTCAAATGGGGAAGCTCAAATTACCAAGTCAAAACGCACTACCAGGAAGCTTCCTATTGCAAATTTTGAAACAGCCCTGGAGCAAACAAATCCTGAATTCGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAAGTGTCAGATCCAGAGCAAGAAAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAGCTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTGGTCAGCCAGAAGTTGAAAGTGAGACCCCCAAGCAGCATTTGGAAATGACGAAAGTTATTCCGGGTCACGCTGTTTTAGAACAAGCGACCATTACTTCTGATGATAAGATCAAGATGGAAGAAACTTCAACCATCTCGAATGTGCCTGATGTCGAAATCACTCCAATACCATCAGTCAACAAGGAAGTGTCTGAGATTCTAAACAATTATCAAGTGTCTGTAGAATCAAAGCCCTTGTCAGAGACTCCAACTAAAGATAGGAACACTTCTCATGACGAAGTTAAAAACAAGCTAGGCAACCTACCAGAGACTATTTTCAAAGATGAAAACTCCCTATTAACAAATGGAGATTTGAGTCATAGTGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAATCTCAAATTTGACAAAGCAGGAGAATGGAGAAGACGGCATAAAGAACAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAGTTGAGGGCACAAGGGTCCCCAAGGTTTGGACAAGATGGGACTGAGAAAAACAACACTGCTGGTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTAACAACCAGATTAGTTCGCATTCACCTAAGCCACAGAGATCAGTTCCGGCAGGTGGCAAAGGGGGAAACAAAAGTGACAGAACAGTACCATCTTCTAAAGCAGGGAATGGGAAGGTAACTCAAGCTGAGTGGAGGAGGTAA

Predicted protein sequences of Glyma04g34150

Limit To All Plant Sequences

>Glyma04g34150.3   sequence type=predicted peptide   gene model=Glyma04g34150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSPGKWIKTVLFGKKSSKSNISKGREKFVNKKEAVVSSNELENGLSLDPTPDEIATNEEDHELENEESENILPDNQERDIIGSVDPDAPPDPEKIRLEQAASKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRKQAVVTLCCMYGIVKLQALVRGGRIRQSNDFHEKCNLFKPLDAKLGEPVGISTKISKLTANTFIHKLLASSITIMALQLQYVNGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNVSNGEAQITKSKRTTRKLPIANFETALEQTNPEFEKPKRNFRKTPYQVSDPEQENPQSELEKVKRSLRKIHNPVVENAGQPEVESETPKQHLEMTKVIPGHAVLEQATITSDDKIKMEETSTISNVPDVEITPIPSVNKEVSEILNNYQVSVESKPLSETPTKDRNTSHDEVKNKLGNLPETIFKDENSLLTNGDLSHSDLTGNENQKPTRKISNLTKQENGEDGIKNSPKLPSYMAATESAKAKLRAQGSPRFGQDGTEKNNTAGGSGRHSLPSSTNNQISSHSPKPQRSVPAGGKGGNKSDRTVPSSKAGNGKVTQAEWRR*

>Glyma04g34150.4   sequence type=predicted peptide   gene model=Glyma04g34150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSPGKWIKTVLFGKKSSKSNISKGREKFVNKKEAVVSSNELENGLSLDPTPDEIATNEEDHELENEESENILPDNQERDIIGSVDPDAPPDPEKIRLEQAASKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRKQAVVTLCCMYGIVKLQALVRGGRIRQSNDFHEKCNLFKPLDAKLGEPVGISTKISKLTANTFIHKLLASSITIMALQLQYVNGDPNSVLSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNVSNGEAQITKSKRTTRKLPIANFETALEQTNPEFEKPKRNFRKTPYQVSDPEQENPQSELEKVKRSLRKIHNPVVENAGQPEVESETPKQHLEMTKVIPGHAVLEQATITSDDKIKMEETSTISNVPDVEITPIPSVNKEVSEILNNYQVSVESKPLSETPTKDRNTSHDEVKNKLGNLPETIFKDENSLLTNGDLSHSDLTGNENQKPTRKISNLTKQENGEDGIKNSPKLPSYMAATESAKAKLRAQGSPRFGQDGTEKNNTAGGSGRHSLPSSTNNQISSHSPKPQRSVPAGGKGGNKSDRTVPSSKAGNGKVTQAEWRR*

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