SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47780 | AT | Annotation by Michelle Graham. TAIR10: ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935 | SoyBase | E_val: 0 | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG0059 | KOG | Lipid exporter ABCA1 and related proteins, ABC superfamily | JGI | ISS | |
| PTHR19229 | Panther | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A (ABCA) | JGI | ISS | |
| PTHR19229:SF69 | Panther | ATATH7 (ABC2 HOMOLOG 7), ATPASE, COUPLED TO TRANSM | JGI | ISS | |
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| UniRef100_B9R969 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Abc transporter, putative n=1 Tax=Ricinus communis RepID=B9R969_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JWX7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWX7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g34130 not represented in the dataset |
Glyma04g34130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g20370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g172900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g34130.1 sequence type=CDS gene model=Glyma04g34130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAATGGAAACACAGCCAACGAACCCGCAAGCTTCTGGACTCAAGCAAACGCTCTTCTTAGGAAGAATTTAACCTTTCAGAAACGAAATGTTAAAACAAACGTTGGACTCATCCTGTCCCCGTTCATTTTGTGTCTCTTGCTGGTTCTGCTCCAAAGGTTGCTGGAGTACCAATTGGACAAGGCTGAGAACAAGTGTGGCTGCGTTTGTGTTAGGAGACAAGGGGACACGTGTCTCGAGGAGGAGTGCGGCATTGAGCATTCGGATTTGGACCAGTTTGCCACGTGTCCTATTCCCAGCCCTCCAGAGTGGCCTCCTCTGCTGCAAGTTCCCGCACCACAGTACCGCGCTGTGAGAACGGATTATTTCCCCTTTTCTGATTTTCCAAACACGTCCTGCAGGAAGAATGGCTCTTGCCCTGTCACTATGCTCTTCACTGGCACTAACCAATCTTTTGGAGAAATCATATCTAGGAATATGATTCCAAGTACCTTGAGTACTATATACAGCTCTGATATTATGGCTAGTTTGGCATCAAATGTAGTGGGATCAGAATCAGAGCCAGGGAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGACCTTCCTATTTATTATCTACAGAATCAGTGCACGCAGAACTCTACATTCTCCGTTTCTGTTCAGATGTCAGGGATTAGCAAGCAGCAAGAGGTAATATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTGAACAATGAGCTATATAAAGGTTATTGGAGAAGTAACATAGAGAGACAGATCAATGAGATAGCTGCAGGTTATGATTTTTTAAATTCAAATGGGAGTATATTTAACGTCAGCATATGGTACAACTCAACCTACAAAAAGGACACTGGCTTTAATCCAATTGCATTGGCGCGTATTCCTCGTTCTGTAAATTTGGTATCAAATGCGTACCTTCAGTTTCTGTTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCAATTAAATTGGATTTGGCTTCTCTTTTGGGTGGTGTCTTCTTTACATGGGTCATCTTGCAACTTTTCCCTATTCCCTTGACATCGCTAGTATATGAGAAGCAACAAAAGTTAAGAATCATGATGAAAATGCATGGTCTTGATGACGGGCCATATTGGATGATTTCGTATGGTTATTTTCTTGCCATATCCATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATCCGTGTTTTATTTCATCTATATAAATTTACAAATTTCACTGGCTTTTTTATTGGCTTCCCTGTTTTCAAATGTTAAAACTGCTACAGTACTTGCATATATAGGTATGTTTGGAACTGGGCTATTAGCTGACTTTCCTTTCCATTTTTTTGTTCAAGACACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGTTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATGCCTTTAGTGGGGATGCTTTGGGGACCGATGGTATGCGCTGGAGTGATCTGAGTGATAGCACAAATGGCATGAAGGAGGTCTTAATTATCATGTTTGTGGAGTGGCTATTGGTGCTTTTGTTTGCTTATTATATCGATCAAGTTTTGTCTTCAGGATGCAGGAAAAGTCCTCTTTTCTTGAAAAGATTTCAGAAAAAGCCCCATTCATCTTTTCGGAAGCCTAGTATCCAAAGGCAGAAATCTAAGGTTTTTGTTCAGATAGAGAAACCTGATGTCACTCAAGAGAGGGAGAAGGTGGAGGAACTGCTACTTGAATCGACTATTAATCAAGCAATTGTATGCGACAACATGAGAAAGGTCTATCCGGGGAGGGATGGCAACCCGGAGAAACTTGCAGTGAGAGGGTTGTCCCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACCAAGCCAACCTCTGGTACCGCATATGTTCAAGGTCTTGACTTAAGAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAATCCCTAACCGGAAGAGAGCACCTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTAACCCAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTCACGGAGGAGTTGCTGATAAGCAAGCTGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTGGCAATTTCGTTGATTGGAGATCCTAAAGTGGTTTATATGGACGAGCCAAGTACTGGACTTGACCCTGCATCAAGAAAAAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAAGCAGAAGTCCTATGTGATCGATTAGGAATATTTGTAGACGGTGGCTTGCAGTGCATAGGAAATCCGAAGGAGTTGAAAGCCAGGTATGGAGGAACATATGTCTTCACAATGACAACATCTATTGATCATGAAAATGATGTAGAGAATTTGGTGCGACAGCTCTTCCCAAATGCTAACAAGATCTACCATATCTCTGGCACCCAAAAATTCGAGCTACCAAAGGATGAGGTTAAAATAGCAAATGTATTCCAAGCTGTAGAAACCGCAAAGAGAAGCTTCACCGTTTCAGCGTGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAAGTTGCACGTGGGGCTCAGGCATTTAACACCTTGTCATAA
>Glyma04g34130.1 sequence type=predicted peptide gene model=Glyma04g34130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENGNTANEPASFWTQANALLRKNLTFQKRNVKTNVGLILSPFILCLLLVLLQRLLEYQLDKAENKCGCVCVRRQGDTCLEEECGIEHSDLDQFATCPIPSPPEWPPLLQVPAPQYRAVRTDYFPFSDFPNTSCRKNGSCPVTMLFTGTNQSFGEIISRNMIPSTLSTIYSSDIMASLASNVVGSESEPGNTNFLEPAFFSDLPIYYLQNQCTQNSTFSVSVQMSGISKQQEVICAQGLRLWRNSSSEVNNELYKGYWRSNIERQINEIAAGYDFLNSNGSIFNVSIWYNSTYKKDTGFNPIALARIPRSVNLVSNAYLQFLLGPGTKMFFEFVKEMPKPETPIKLDLASLLGGVFFTWVILQLFPIPLTSLVYEKQQKLRIMMKMHGLDDGPYWMISYGYFLAISIVYMLCFVIFGSVIGLNFFTMNDYSIQSVFYFIYINLQISLAFLLASLFSNVKTATVLAYIGMFGTGLLADFPFHFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQYAFSGDALGTDGMRWSDLSDSTNGMKEVLIIMFVEWLLVLLFAYYIDQVLSSGCRKSPLFLKRFQKKPHSSFRKPSIQRQKSKVFVQIEKPDVTQEREKVEELLLESTINQAIVCDNMRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAYVQGLDLRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGGLQCIGNPKELKARYGGTYVFTMTTSIDHENDVENLVRQLFPNANKIYHISGTQKFELPKDEVKIANVFQAVETAKRSFTVSAWGLADTTLEDVFIKVARGAQAFNTLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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