SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G35630 | AT | Annotation by Michelle Graham. TAIR10: glutamine synthetase 2 | chr5:13831220-13833239 FORWARD LENGTH=430 | SoyBase | E_val: 2.00E-54 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006098 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt | SoyBase | N/A | ISS |
| GO:0006542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009749 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0010114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to red light | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0010218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to far red light | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0019676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonia assimilation cycle | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004356 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate-ammonia ligase activity | SoyBase | N/A | ISS |
| PTHR20852 | Panther | GLUTAMINE SYNTHETASE | JGI | ISS | |
| PTHR20852:SF14 | Panther | GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LIGASE) ( | JGI | ISS | |
| PF03951 | PFAM | Glutamine synthetase, beta-Grasp domain | JGI | ISS | |
| UniRef100_I1JWX3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWX3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1M170 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamine synthetase n=1 Tax=Glycine max RepID=I1M170_SOYBN | SoyBase | E_val: 8.00E-60 | ISS |
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Glyma04g33990 not represented in the dataset |
Glyma04g33990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g33990.1 sequence type=CDS gene model=Glyma04g33990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACAGATTTTGGCTCCCTCTATGCAATGTTCTTTATTGTGGAAACAAAATAAGAAAGTTTCACCTACCAGTTCTGCTAAATTTAGAGTGTTGGCAATTAAGTCTGACAATAGCACCATCAACAGGCTCGAGGGTCTACTTAATTTGGATATCACTCCATTCACTGACAAGATAATTGCTGAGTACATTTGGTTTAACAGCCTGAGATCTTTGTCTCAACACATTGGAGGGTACATCCTTTGTGGTACAAGTAGAGGGTACATCTACTTGGGTTCGACTGAGAACAGGAGAGGGTACATCTCTTGTGGATCAGTTCTAGTGGAGGGTACATCCACTAGGTTCAAAGAGAACAAGGGAGGGTACATCCCTTGTGGATCTTTGCTTATTGGGGGGACAAGAATTGATATGCGCAGTAAATCAAGAACAATATCAAAGCCTGTTGAAGATCCCTCTAAGCTCCCTAAATGGAACTATGATGGATCTAGCACAGGACAGGCACCTGGTGATGATAATGAAGTAATCCTATATCCTCAAGCAATTTTCAAAGATCCTTTCCGTGGTGGTAACAATATTTTGGTCATTTGCGATTCTTACACCCCACAAGGTGAGCCTATCCCTACAAACAAAAGACACAGAGCTGCTGAAATTTTCAGTAACCCAAAGGTCCAAGTTGAAGTTCCATGTGTCAAAATTCCTAAAATATTTAACATGCTTTTAGTCTCTACATGTATCCAAAAATATGACCCTAAGGTTAAGGTGTATTGTGGGGAGAAACATGGGAAG
>Glyma04g33990.1 sequence type=predicted peptide gene model=Glyma04g33990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQILAPSMQCSLLWKQNKKVSPTSSAKFRVLAIKSDNSTINRLEGLLNLDITPFTDKIIAEYIWFNSLRSLSQHIGGYILCGTSRGYIYLGSTENRRGYISCGSVLVEGTSTRFKENKGGYIPCGSLLIGGTRIDMRSKSRTISKPVEDPSKLPKWNYDGSSTGQAPGDDNEVILYPQAIFKDPFRGGNNILVICDSYTPQGEPIPTNKRHRAAEIFSNPKVQVEVPCVKIPKIFNMLLVSTCIQKYDPKVKVYCGEKHGK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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