Glyma04g33900 - SoyBase

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Report for Sequence Feature Glyma04g33900

Feature Type:	gene_model
Chromosome:	Gm04
Start:	39680149
stop:	39682340
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g33900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39850	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S4 \| chr5:15950053-15951171 FORWARD LENGTH=197	SoyBase	E_val: 5.00E-124	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
GO:0019843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: rRNA binding	SoyBase	N/A	ISS
KOG3301	KOG	Ribosomal protein S4	JGI		ISS
PTHR11831	Panther	30S 40S RIBOSOMAL PROTEIN	JGI		ISS
PTHR11831:SF3	Panther	40S RIBOSOMAL PROTEIN S9	JGI		ISS
PF00163	PFAM	Ribosomal protein S4/S9 N-terminal domain	JGI		ISS
PF01479	PFAM	S4 domain	JGI		ISS
UniRef100_B9R982	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S9, putative n=1 Tax=Ricinus communis RepID=B9R982_RICCO	SoyBase	E_val: 4.00E-125	ISS
UniRef100_C6TFG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TFG0_SOYBN	SoyBase	E_val: 7.00E-141	ISS

Expression Patterns of Glyma04g33900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g33900 not represented in the dataset	Glyma04g33900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g33900

Paralog	Evidence	Comments
Glyma06g20540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g33900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g171400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g33900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g33900

Limit To All Plant Sequences

>Glyma04g33900.2   sequence type=transcript   gene model=Glyma04g33900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGGGTTGGGCCCGGACCCGTCCCTGAAGCTCAACTACACACACATGGCAGACACTAAGAACTAGGGTTTTCATTTAAAAAGGGCAAAACAAAAGGATGCAAAAAAGATCCAGTTGTCGGAGGCGCAGAGTAGAGCAGCAGAGAAGAGAGAAAACGGCACTGCAGCCGTAGAAGGAAAACCGACCATGGTGCACGTCTCCTTTTACAGGAACTATGGTAAGACGTTTAAGAAGCCCCGCCGTCCGTACGAGAAGGAGCGTCTAGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCGCTCAGCCGCATCCGCAACAACGCGCGGAATCTCCTTACCCTCGACGAGAAGAACCCGCGCCGGATCTTCGAGGGCGAGGCTCTTCTCCGCAGAATGTTCCGCTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTTCAGACGCTCGTCTTCAAATCCGGGATGGCCAAGTCCATTCACCACGCCAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGACTCACAGAAGCACATTGACTTCTCACTTACAAGTCCCCTTGGTGGCGGACGCCCTGGAAGAGTGAAGAGAAGAAACCAAAGGGCTGCTGCTAAGAAGGCCGCAGGTGGAGACGGAGACGAGGAAGACGAGGATTAGACTGTTCATTATGTCTTTCTCTAGTGCTATTAGATCTTATGCCACCTTTTACTTTGCCTACCTAATCGATTTTGGTTGTTATACATTTTCATCCTTTGGTTCCCTTGTTTGAGAAAATATTAAGTGGTGACATATTATGTTTTTGTGAATTTGGATATTTTAAAGTATCAAGATTTTCCATTAAATAATTTTTGATGATCATTGATTGGTTTCCTCTGTCATAAACTTTTAACGGACTTGGTAGTTTCTGAGCATCATTGCC

Coding sequences of Glyma04g33900

Limit To All Plant Sequences

>Glyma04g33900.1   sequence type=CDS   gene model=Glyma04g33900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCACGTCTCCTTTTACAGGAACTATGGTAAGACGTTTAAGAAGCCCCGCCGTCCGTACGAGAAGGAGCGTCTAGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCGCTCAGCCGCATCCGCAACAACGCGCGGAATCTCCTTACCCTCGACGAGAAGAACCCGCGCCGGATCTTCGAGGGCGAGGCTCTTCTCCGCAGAATGTTCCGCTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTTCAGACGCTCGTCTTCAAATCCGGGATGGCCAAGTCCATTCACCACGCCAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGGGAGGCAAGTGGTGAACATCCCATCTTTCTTGGTGAGGGTTGACTCACAGAAGCACATTGACTTCTCACTTACAAGTCCCCTTGGTGGCGGACGCCCTGGAAGAGTGAAGAGAAGAAACCAAAGGGCTGCTGCTAAGAAGGCCGCAGGTGGAGACGGAGACGAGGAAGACGAGGATTAG

>Glyma04g33900.2   sequence type=CDS   gene model=Glyma04g33900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCACGTCTCCTTTTACAGGAACTATGGTAAGACGTTTAAGAAGCCCCGCCGTCCGTACGAGAAGGAGCGTCTAGACGCGGAGCTGAAGCTGGTGGGGGAGTACGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCGCTCAGCCGCATCCGCAACAACGCGCGGAATCTCCTTACCCTCGACGAGAAGAACCCGCGCCGGATCTTCGAGGGCGAGGCTCTTCTCCGCAGAATGTTCCGCTACGGACTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCGCCCTCACCGTCGAGAATTTCCTCGAGCGCCGCCTTCAGACGCTCGTCTTCAAATCCGGGATGGCCAAGTCCATTCACCACGCCAGGGTTCTCATCAAGCAGAGACATATCAGGGTTGACTCACAGAAGCACATTGACTTCTCACTTACAAGTCCCCTTGGTGGCGGACGCCCTGGAAGAGTGAAGAGAAGAAACCAAAGGGCTGCTGCTAAGAAGGCCGCAGGTGGAGACGGAGACGAGGAAGACGAGGATTAG

Predicted protein sequences of Glyma04g33900

Limit To All Plant Sequences

>Glyma04g33900.1   sequence type=predicted peptide   gene model=Glyma04g33900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDED*

>Glyma04g33900.2   sequence type=predicted peptide   gene model=Glyma04g33900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDED*

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