SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36710 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr2:15389614-15391200 REVERSE LENGTH=407 | SoyBase | E_val: 3.00E-80 | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0030599 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity | SoyBase | N/A | ISS |
| PF01095 | PFAM | Pectinesterase | JGI | ISS | |
| UniRef100_I1NAE9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1NAE9_SOYBN | SoyBase | E_val: 3.00E-113 | ISS |
| UniRef100_I1NAE9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1NAE9_SOYBN | SoyBase | E_val: 3.00E-113 | ISS |
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Glyma04g33861 not represented in the dataset |
Glyma04g33861 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g33861.1 sequence type=CDS gene model=Glyma04g33861 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTCACTTTCAACTGTCTCTCACTTGCTGGTAAGCTCACAAATCATGAGATTCCGGAGAAGCTGGTGGAGGATGTGAAGAAAAAGTCTCGTGAGTTTCATGATTTTTCGGTGGAGGAAAAGGAGTTTAGTGACAAAGTCCCTTTTACACCCATCAGGAAGAAGGTAGTGGTGCAGGCCAACAAAAACTACTTGATAATTCAAGGTCAAGGGTATCTGAATACAACCATAGAATGGAACAACACCGCAAATTCCACCGGCTATACTTCCTATAGCTACTCCTTTTTCATCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACATGGCTCCTCCACCGCCACCAAGAGTTGTTGGGGCACAAGCAGTGGCACTGAGGGACACACTCAATGATGATAGTGGAAGACATTATTTTAAAGAATGCTTCATCCAAGGATCCATTGATTTCATATTAGGAAATGCTAAATCACTTTATGAGGATTGTACCATAAAGTGTGTGGCAAAAGAAGAGAAGGATGAGATTAGCGGATCGATCACCGCTCAAGGGAGGCAATCGATGAATGAGGAAAGCGGATTTTCCTTTGTGAATTGTAGAATTGTTGGAAGTGGAAGTGGAAGTGGGAGGGAGTGGCTTGGAAGAGCTTGGGGAGCCTATGCCACTGTGTTCTTCTCAAGAACATACATGTCTGATGTCGTAGCTCCTGATGGATGGAACGATTTGAGAGATCCCTTTAGAGAC
>Glyma04g33861.1 sequence type=predicted peptide gene model=Glyma04g33861 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQFTFNCLSLAGKLTNHEIPEKLVEDVKKKSREFHDFSVEEKEFSDKVPFTPIRKKVVVQANKNYLIIQGQGYLNTTIEWNNTANSTGYTSYSYSFFIFASKFTAYNISFKNMAPPPPPRVVGAQAVALRDTLNDDSGRHYFKECFIQGSIDFILGNAKSLYEDCTIKCVAKEEKDEISGSITAQGRQSMNEESGFSFVNCRIVGSGSGSGREWLGRAWGAYATVFFSRTYMSDVVAPDGWNDLRDPFRD
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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