Glyma04g33750 - SoyBase

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Report for Sequence Feature Glyma04g33750

Feature Type:	gene_model
Chromosome:	Gm04
Start:	39509681
stop:	39514759
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g33750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18800	AT	Annotation by Michelle Graham. TAIR10: NAP1-related protein 2 \| chr1:6481466-6483463 REVERSE LENGTH=256	SoyBase	E_val: 1.00E-121	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0042393	GO-mf	Annotation by Michelle Graham. GO Molecular Function: histone binding	SoyBase	N/A	ISS
KOG1508	KOG	DNA replication factor/protein phosphatase inhibitor SET/SPR-2	JGI		ISS
PTHR11875	Panther	NUCLEOSOME ASSEMBLY PROTEIN	JGI		ISS
PTHR11875:SF47	Panther		JGI		ISS
PF00956	PFAM	Nucleosome assembly protein (NAP)	JGI		ISS
UniRef100_I1KCS5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCS5_SOYBN	SoyBase	E_val: 1.00E-154	ISS
UniRef100_Q9M9V0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F6A14.10 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M9V0_ARATH	SoyBase	E_val: 1.00E-117	ISS

Expression Patterns of Glyma04g33750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g33750 not represented in the dataset	Glyma04g33750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g33750

Paralog	Evidence	Comments
Glyma06g20700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g33750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g170400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g33750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g33750

Limit To All Plant Sequences

>Glyma04g33750.2   sequence type=transcript   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTCACACACTCTCCTCACTCGCTCGACCTAGTTAGAACTGTGCTAGGGTTTTACGAAACCACCGAAGTTGCAGAAAGAAGAAGAAAAATGGTGGCTGACAGGAGCAAGAAGCCGAAGGTCTCCGACAAGGGCGAAAACCTCGATGAAATCGACGGAGAACTCGTCCTCTCCATCGAGAAGTTGCAGGAGATCCAAGACGAGCTTGAAAAGATCAACGAGGAAGCCAGTGACAAAGTTCTGGAAATAGAGCAGAAGTACAATGAGATACGGAAGCCCGTTTATGATAAGCGCAATGATATTATCAATGCCATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTTGGTGATCTTTTGAACGAGGAAGATCAGAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGCTACTCAATCACCTTTAATTTCAATGCCAATCCCTATTTCGAGGATACAAAACTTGTAAAGACTTATACCTTTCTTGAGGAAGGAACAACTAAGGTTACTGCTACACCCATAAAATGGAAAGAGGGCAAAGGCATACCCAATGGAGTTAATCATGAAAAAAAAGGGAACAAGCGTGCTCCTACTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGATATTGATGACATTCATGATGAGGTTGCAGAATTGATCAAGGATGATTTATGGCCAAACCCACTTACCTATTTCAACAATGAAGAACCTGATGAAGAGGAAGGTGATGAGGATGAAGCTGATGATGAGGGAAAGGAGGATGAGTCTGATGATGATGACGACAATCAAGAGGATGACGATGAGGGTGAGGAGGATGCCAAGTGAAAAATACATTATGGTCATATTACTTTTTTTTGGGGTTGTAGGAGTATGTAAGCGTTCTTTAGGGGATGATCATGGCCACCCTTTGTGGTTGTCGTCTTATGTCAGCAGGTGGAGCTACCAAGGCCAGTTATTGGTTCTCTCTCTGACTATAGTCTATTTATTGTCCTATGAAGTTATTTCTGGTTTCATCCCTTGTGTACTTTTTCAGATACTAATGTTTCAGCGGCTTTTTTCCATAACCCTTCGTCGTGGAACTACATGGTAAAATTGCAGTATTTAGTGTATAGCTGTTTCCAGTTTGGTATTTCTTAGCATGCAGGATTACCATGGGAAGCATTTCTACAAACGAGAAATCATTCCCTAGGCAAATGTTTTCAATGTTGTCCAATTTATATCCTCATACCAATGACTGTTGGGATCTTTCACAAAAAGAAAAGAAAAGAAAAGAAAAGTAATGCTACTTGCACCAGTCACATTTACCGACTTTTTTC

>Glyma04g33750.3   sequence type=transcript   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTCACACACTCTCCTCACTCGCTCGACCTAGTTAGAACTGTGCTAGGGTTTTACGAAACCACCGAAGTTGCAGAAAGAAGAAGAAAAATGGTGGCTGACAGGAGCAAGAAGCCGAAGGTCTCCGACAAGGGCGAAAACCTCGATGAAATCGACGGAGAACTCGTCCTCTCCATCGAGAAGTTGCAGGAGATCCAAGACGAGCTTGAAAAGATCAACGAGGAAGCCAGTGACAAAGTTCTGGAAATAGAGCAGAAGTACAATGAGATACGGAAGCCCGTTTATGATAAGCGCAATGATATTATCAATGCCATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTTGGTGATCTTTTGAACGAGGAAGATCAGAAGATATTTAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGCTACTCAATCACCTTTAATTTCAATGCCAATCCCTATTTCGAGGATACAAAACTTGTAAAGACTTATACCTTTCTTGAGGAAGGAACAACTAAGGTTACTGCTACACCCATAAAATGGAAAGAGGGCAAAGGCATACCCAATGGAGTTAATCATGAAAAAAAAGGGAACAAGCGTGCTCCTACTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGATATTGATGACATTCATGATGAGCAGGTTGCAGAATTGATCAAGGATGATTTATGGCCAAACCCACTTACCTATTTCAACAATGAAGAACCTGATGAAGAGGAAGGTGATGAGGATGAAGCTGATGATGAGGGAAAGGAGGATGAGTCTGATGATGATGACGACAATCAAGAGGATGACGATGAGGGTGAGGAGGATGCCAAGTGAAAAATACATTATGGTCATATTACTTTTTTTTGGGGTTGTAGGAGTATGTAAGCGTTCTTTAGGGGATGATCATGGCCACCCTTTGTGGTTGTCGTCTTATGTCAGCAGGTGGAGCTACCAAGGCCAGTTATTGGTTCTCTCTCTGACTATAGTCTATTTATTGTCCTATGAAGTTATTTCTGGTTTCATCCCTTGTGTACTTTTTCAGATACTAATGTTTCAGCGGCTTTTTTCCATAACCCTTCGTCGTGGAACTACATGGTAAAATTGCAGTATTTAGTGTATAGCTGTTTCCAGTTTGGTATTTCTTAGCATGCAGGATTACCATGGGAAGCATTTCTACAAACGAGAAATCATTCCCTAGGCAAATGTTTTCAATGTTGTCCAATTTATATCCTCATACCAATGACTGTTGGGATCTTTCACAAAAAGAAAAGAAAAGAAAAGAAAAGTAATGCTACTTGCACCAGTCACATTTACCGACTTTTTTC

Coding sequences of Glyma04g33750

Limit To All Plant Sequences

>Glyma04g33750.1   sequence type=CDS   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGACAGGAGCAAGAAGCCGAAGGTCTCCGACAAGGGCGAAAACCTCGATGAAATCGACGGAGAACTCGTCCTCTCCATCGAGAAGTTGCAGGAGATCCAAGACGAGCTTGAAAAGATCAACGAGGAAGCCAGTGACAAAGTTCTGGAAATAGAGCAGAAGTACAATGAGATACGGAAGCCCGTTTATGATAAGCGCAATGATATTATCAATGCCATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTTGGTGATCTTTTGAACGAGGAAGATCAGAAGATATTTAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGCTACTCAATCACCTTTAATTTCAATGCCAATCCCTATTTCGAGGATACAAAACTTGTAAAGACTTATACCTTTCTTGAGGAAGGAACAACTAAGGTTACTGCTACACCCATAAAATGGAAAGAGGGCAAAGGCATACCCAATGGAGTTAATCATGAAAAAAAAGGGAACAAGCGTGCTCCTACTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGATATTGATGACATTCATGATGAGGTTGCAGAATTGATCAAGGATGATTTATGGCCAAACCCACTTACCTATTTCAACAATGAAGAACCTGATGAAGAGGAAGGTGATGAGGATGAAGCTGATGATGAGGGAAAGGAGGATGAGTCTGATGATGATGACGACAATCAAGAGGATGACGATGAGGGTGAGGAGGATGCCAAGTGA

>Glyma04g33750.2   sequence type=CDS   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGACAGGAGCAAGAAGCCGAAGGTCTCCGACAAGGGCGAAAACCTCGATGAAATCGACGGAGAACTCGTCCTCTCCATCGAGAAGTTGCAGGAGATCCAAGACGAGCTTGAAAAGATCAACGAGGAAGCCAGTGACAAAGTTCTGGAAATAGAGCAGAAGTACAATGAGATACGGAAGCCCGTTTATGATAAGCGCAATGATATTATCAATGCCATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTTGGTGATCTTTTGAACGAGGAAGATCAGAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGCTACTCAATCACCTTTAATTTCAATGCCAATCCCTATTTCGAGGATACAAAACTTGTAAAGACTTATACCTTTCTTGAGGAAGGAACAACTAAGGTTACTGCTACACCCATAAAATGGAAAGAGGGCAAAGGCATACCCAATGGAGTTAATCATGAAAAAAAAGGGAACAAGCGTGCTCCTACTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGATATTGATGACATTCATGATGAGGTTGCAGAATTGATCAAGGATGATTTATGGCCAAACCCACTTACCTATTTCAACAATGAAGAACCTGATGAAGAGGAAGGTGATGAGGATGAAGCTGATGATGAGGGAAAGGAGGATGAGTCTGATGATGATGACGACAATCAAGAGGATGACGATGAGGGTGAGGAGGATGCCAAGTGA

>Glyma04g33750.3   sequence type=CDS   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGACAGGAGCAAGAAGCCGAAGGTCTCCGACAAGGGCGAAAACCTCGATGAAATCGACGGAGAACTCGTCCTCTCCATCGAGAAGTTGCAGGAGATCCAAGACGAGCTTGAAAAGATCAACGAGGAAGCCAGTGACAAAGTTCTGGAAATAGAGCAGAAGTACAATGAGATACGGAAGCCCGTTTATGATAAGCGCAATGATATTATCAATGCCATTCCTGATTTCTGGTTAACTGCTTTTTTGAGTCATCCTGCTCTTGGTGATCTTTTGAACGAGGAAGATCAGAAGATATTTAAGTATTTGAGTTCTCTTGAGGTTGAAGATTTTAAAGATGTCAAATCAGGCTACTCAATCACCTTTAATTTCAATGCCAATCCCTATTTCGAGGATACAAAACTTGTAAAGACTTATACCTTTCTTGAGGAAGGAACAACTAAGGTTACTGCTACACCCATAAAATGGAAAGAGGGCAAAGGCATACCCAATGGAGTTAATCATGAAAAAAAAGGGAACAAGCGTGCTCCTACTGATGTCAGCTTCTTTAGTTGGTTTAGTGACACTGAGCAGAAAGATGATATTGATGACATTCATGATGAGCAGGTTGCAGAATTGATCAAGGATGATTTATGGCCAAACCCACTTACCTATTTCAACAATGAAGAACCTGATGAAGAGGAAGGTGATGAGGATGAAGCTGATGATGAGGGAAAGGAGGATGAGTCTGATGATGATGACGACAATCAAGAGGATGACGATGAGGGTGAGGAGGATGCCAAGTGA

Predicted protein sequences of Glyma04g33750

Limit To All Plant Sequences

>Glyma04g33750.1   sequence type=predicted peptide   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYSITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPTDVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNNEEPDEEEGDEDEADDEGKEDESDDDDDNQEDDDEGEEDAK*

>Glyma04g33750.2   sequence type=predicted peptide   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKYLSSLEVEDFKDVKSGYSITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPTDVSFFSWFSDTEQKDDIDDIHDEVAELIKDDLWPNPLTYFNNEEPDEEEGDEDEADDEGKEDESDDDDDNQEDDDEGEEDAK*

>Glyma04g33750.3   sequence type=predicted peptide   gene model=Glyma04g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVADRSKKPKVSDKGENLDEIDGELVLSIEKLQEIQDELEKINEEASDKVLEIEQKYNEIRKPVYDKRNDIINAIPDFWLTAFLSHPALGDLLNEEDQKIFKYLSSLEVEDFKDVKSGYSITFNFNANPYFEDTKLVKTYTFLEEGTTKVTATPIKWKEGKGIPNGVNHEKKGNKRAPTDVSFFSWFSDTEQKDDIDDIHDEQVAELIKDDLWPNPLTYFNNEEPDEEEGDEDEADDEGKEDESDDDDDNQEDDDEGEEDAK*

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