Glyma04g33360 - SoyBase

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Report for Sequence Feature Glyma04g33360

Feature Type:	gene_model
Chromosome:	Gm04
Start:	38963143
stop:	38965295
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g33360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47470	AT	Annotation by Michelle Graham. TAIR10: light-harvesting chlorophyll-protein complex I subunit A4 \| chr3:17493622-17494773 REVERSE LENGTH=251	SoyBase	E_val: 2.00E-158	ISS
GO:0009765	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0010287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030076	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex	SoyBase	N/A	ISS
GO:0016168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding	SoyBase	N/A	ISS
PTHR21649	Panther	CHLOROPHYLL A/B BINDING PROTEIN	JGI		ISS
PF00504	PFAM	Chlorophyll A-B binding protein	JGI		ISS
UniRef100_B9N4C4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Light-harvesting complex I protein Lhca4 n=1 Tax=Populus trichocarpa RepID=B9N4C4_POPTR	SoyBase	E_val: 5.00E-163	ISS
UniRef100_UPI00020819F2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00020819F2 related cluster n=1 Tax=unknown RepID=UPI00020819F2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g33360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g33360 not represented in the dataset	Glyma04g33360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g33360

Paralog	Evidence	Comments
Glyma06g20960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g33360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g167900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g33360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g33360

Limit To All Plant Sequences

>Glyma04g33360.2   sequence type=transcript   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAACAAAACCACCACACTCTTATTGTTTTCTTCATATCTTCCTTGTCACTGCCCGTGTGTCGCCGCCATGGCCACCGTCACCACCCAAGCCTCCGCCGCAATTTTCCGGCCATGTACCTCGAAATCGAGGTTTTTGACCGGCTCTTCCGGTAAACTTAACCGGGAAGTGACTATGCGGCCAATGGGGTGCCCTCCTTCTGCCTCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTACCTGGCTTGGCCTCCCCAACTTACCTCAATGGCACTCTTCCTGGTGACAATGGATTTGACCCTCTGGGGCTAGCTGAGGACCCAGAGAACTTGAGGTGGTACGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAGTTTGGAATCATCAATGCCCCTCAATGGTATGATGCTGGGAAATCAGAGTACTTTGCATCTTCCTCAACCCTCTTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCCGAAGATGGCAGGACATCAAGAACCCTGGCTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGTACATGCTTTGTTATCTTTTCCTTAAAAGAGTTTATTTATTGATTTAATTACTTAGGTTTAAAGCATCCCTAGATTTTAAAATTACTTGACTTAGCTCCTATCCATACATTTTTAAATCTATTTTAGTCTCTAACATCTTGTAA

>Glyma04g33360.3   sequence type=transcript   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTATTAACACTATTAACACATGTTTTGTGGTACTATTAGTCTTCCTGGTGACAATGGATTTGACCCTCTGGGGCTAGCTGAGGACCCAGAGAACTTGAGGTGGTACGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAGTTTGGAATCATCAATGCCCCTCAATGGTATGATGCTGGGAAATCAGAGTACTTTGCATCTTCCTCAACCCTCTTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCCGAAGATGGCAGGACATCAAGAACCCTGGCTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGCAAAGGACCATTTGAGAACCTCTTGCAGCACCTCTCTGACCCGTGGCACAACACCATCATCAATACAATTCGTGGCTACTAAGTTTGTATCCAATGACATGGATAAGCCTGTGTCCTTCTCGTGTAATCCTGAATGGATGAATTTTGAGAGTGATTTGGGCGTGATTGTTGTGATCCATCTATTTTCATGTACAGAGGAACTACGATGGTTTTATATTGTTATTTAGACTGTCCATCAATCAGTAATCAAGCATGATACTTTCTAAAAATTTCATCAAAATTCTAATACAACATTTCAAAAGTATGTAAAATTTACTTCCATTTTTTACAAATTTCAAATTTACAACTTAGATCACCAAATCAGATTTCAAAACTCTACCACCAATATACAAGTCAGTCAAAATAACTGAAATATTTGTATGTGGACGAACTGTAGTAGTCCTACAAGTCTTGTACAATATATGCAGCAAACACATTTGGTGGCTAAAACTAAATCCCATCCCAAATGAACTCCATTCACCTCGTAGATGGAGAAGAATAGTGATAAGAGCAATTCTAATATGATGGAGATAATATTAACTATTATTTGAGTAAATTATACAAATGTC

Coding sequences of Glyma04g33360

Limit To All Plant Sequences

>Glyma04g33360.1   sequence type=CDS   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGTCACCACCCAAGCCTCCGCCGCAATTTTCCGGCCATGTACCTCGAAATCGAGGTTTTTGACCGGCTCTTCCGGTAAACTTAACCGGGAAGTGACTATGCGGCCAATGGGGTGCCCTCCTTCTGCCTCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTACCTGGCTTGGCCTCCCCAACTTACCTCAATGGCACTCTTCCTGGTGACAATGGATTTGACCCTCTGGGGCTAGCTGAGGACCCAGAGAACTTGAGGTGGTACGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAGTTTGGAATCATCAATGCCCCTCAATGGTATGATGCTGGGAAATCAGAGTACTTTGCATCTTCCTCAACCCTCTTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCCGAAGATGGCAGGACATCAAGAACCCTGGCTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGCAAAGGACCATTTGAGAACCTCTTGCAGCACCTCTCTGACCCGTGGCACAACACCATCATCAATACAATTCGTGGCTACTAA

>Glyma04g33360.2   sequence type=CDS   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCGTCACCACCCAAGCCTCCGCCGCAATTTTCCGGCCATGTACCTCGAAATCGAGGTTTTTGACCGGCTCTTCCGGTAAACTTAACCGGGAAGTGACTATGCGGCCAATGGGGTGCCCTCCTTCTGCCTCTTTCAAGGTTGAAGCCAAGAAGGGAGAGTGGTTACCTGGCTTGGCCTCCCCAACTTACCTCAATGGCACTCTTCCTGGTGACAATGGATTTGACCCTCTGGGGCTAGCTGAGGACCCAGAGAACTTGAGGTGGTACGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAGTTTGGAATCATCAATGCCCCTCAATGGTATGATGCTGGGAAATCAGAGTACTTTGCATCTTCCTCAACCCTCTTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCCGAAGATGGCAGGACATCAAGAACCCTGGCTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGTACATGCTTTGTTATCTTTTCCTTAAAAGAGTTTATTTATTGA

>Glyma04g33360.3   sequence type=CDS   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGTGGTACTATTAGTCTTCCTGGTGACAATGGATTTGACCCTCTGGGGCTAGCTGAGGACCCAGAGAACTTGAGGTGGTACGTTCAAGCCGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTTGCAGGAATGTTGCTTCCTGAGGTTTTCACCAAGTTTGGAATCATCAATGCCCCTCAATGGTATGATGCTGGGAAATCAGAGTACTTTGCATCTTCCTCAACCCTCTTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCCGAAGATGGCAGGACATCAAGAACCCTGGCTGTGTCAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGTGTGTTCAACCCCTTGAACTTTGCACCTACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGATTGGCTATGTTGGCATTCTTGGGATTCATAGTTCAACACAACGTGACAGGCAAAGGACCATTTGAGAACCTCTTGCAGCACCTCTCTGACCCGTGGCACAACACCATCATCAATACAATTCGTGGCTACTAA

Predicted protein sequences of Glyma04g33360

Limit To All Plant Sequences

>Glyma04g33360.1   sequence type=predicted peptide   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVTTQASAAIFRPCTSKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIRGY*

>Glyma04g33360.2   sequence type=predicted peptide   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVTTQASAAIFRPCTSKSRFLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANGTCFVIFSLKEFIY*

>Glyma04g33360.3   sequence type=predicted peptide   gene model=Glyma04g33360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCGTISLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTIRGY*

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