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Report for Sequence Feature Glyma04g33335

Feature Type:gene_model
Chromosome:Gm04
Start:38918031
stop:38920451
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g33335
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76490AT Annotation by Michelle Graham. TAIR10: hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642 SoyBaseE_val: 2.00E-83ISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0007033GO-bp Annotation by Michelle Graham. GO Biological Process: vacuole organization SoyBaseN/AISS
GO:0008299GO-bp Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009805GO-bp Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process SoyBaseN/AISS
GO:0015936GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme A metabolic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0019287GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate pathway SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0060964GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene silencing by miRNA SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0004420GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroxymethylglutaryl-CoA reductase (NADPH) activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0042282GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroxymethylglutaryl-CoA reductase activity SoyBaseN/AISS
GO:0050661GO-mf Annotation by Michelle Graham. GO Molecular Function: NADP binding SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
PTHR10572Panther HMG-COA REDUCTASE JGI ISS
PF00368PFAM Hydroxymethylglutaryl-coenzyme A reductase JGI ISS
UniRef100_Q944T9UniRef Annotation by Michelle Graham. Most informative UniRef hit: 3-hydroxy-3-methylglutaryl CoA reductase (Fragment) n=2 Tax=Solanum lycopersicum RepID=Q944T9_SOLLC SoyBaseE_val: 1.00E-90ISS
UniRef100_UPI00023394CCUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023394CC related cluster n=1 Tax=unknown RepID=UPI00023394CC SoyBaseE_val: 1.00E-107ISS

Expression Patterns of Glyma04g33335
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g33335 not represented in the dataset
Glyma04g33335 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g33335 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g167700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g33335
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g33335
>Glyma04g33335.2   sequence type=transcript   gene model=Glyma04g33335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTGGTTTAATGGTGTTTCAGGTCGAGTAGATTTGCAAGGCTCCAAGGTATTCAGTATGCTATAGCTGGGAAGAATGCTTATTTGAGATTCACTTGTAGCACGAGTGATGCCATGGGGATGAACATGGTTTCCAACGGGGTGCAAAACGTTCTTGATTTTCTTTAGAACGATTTTCTTGACATGGATGTTATTGGCATTTTTGGAAATTATTGTTTGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGCGAAGCAATTATCAAAGAAGTGGTGCAGGTGTTGAAGACCAACGTGTCTGCCCTGGTGGAGCTTAACATGCTCAAAAACCTTGTTGGTTCTACTATCGCAGGTGCTCTTGGTGGATTTAACGCCCATGCTAGTAACATTGTTTTTGCCATCTTTATAGCCACTGGCCAAGATCCAGCTCAAAATTTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTTAGTGACCATGCCCTCCATTGAGCTAAGACTCTTGGCCACCATTGTTGTTGGATCTGTTTTAGCAGGAGAGTTGTCTTTGATGTCTGCCATTACAGCAGGGTAA
Coding sequences of Glyma04g33335
>Glyma04g33335.1   sequence type=CDS   gene model=Glyma04g33335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAATTCAGGGTTGGTTCTCGCGGCAGAGTAGAGAAGAGGAGGTCGAGTAGATTTGCAAGGCTCCAAGGTATTCAGTATGCTATAGCTGGGAAGAATGCTTATTTGAGATTCACTTGTAGCACGAGTGATGCCATGGGGATGAACATGGTTTCCAACGGGGTGCAAAACAAACCTGCTGCAGTGAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGCGAAGCAATTATCAAAGAAGTGGTGCAGGTGTTGAAGACCAACGTGTCTGCCCTGGTGGAGCTTAACATGCTCAAAAACCTTGTTGGTTCTACTATCGCAGGTGCTCTTGGTGGATTTAACGCCCATGCTAGTAACATTGTTTTTGCCATCTTTATAGCCACTGGCCAAGATCCAGCTCAAAATTTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTTAGTGACCATGCCCTCCATTGAGCTAAGACTCTTGGCCACCATTGTTGTTGGATCTGTTTTAGCAGGAGAGTTGTCTTTGATGTCTGCCATTACAGCAGGGTAA

>Glyma04g33335.2   sequence type=CDS   gene model=Glyma04g33335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTATTGGCATTTTTGGAAATTATTGTTTGGACAAGAAACCTGCTGCAGTGAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGCGAAGCAATTATCAAAGAAGTGGTGCAGGTGTTGAAGACCAACGTGTCTGCCCTGGTGGAGCTTAACATGCTCAAAAACCTTGTTGGTTCTACTATCGCAGGTGCTCTTGGTGGATTTAACGCCCATGCTAGTAACATTGTTTTTGCCATCTTTATAGCCACTGGCCAAGATCCAGCTCAAAATTTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTTAGTGACCATGCCCTCCATTGAGCTAAGACTCTTGGCCACCATTGTTGTTGGATCTGTTTTAGCAGGAGAGTTGTCTTTGATGTCTGCCATTACAGCAGGGTAA
Predicted protein sequences of Glyma04g33335
>Glyma04g33335.1   sequence type=predicted peptide   gene model=Glyma04g33335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKFRVGSRGRVEKRRSSRFARLQGIQYAIAGKNAYLRFTCSTSDAMGMNMVSNGVQNKPAAVNWIEGRGKSVVCEAIIKEVVQVLKTNVSALVELNMLKNLVGSTIAGALGGFNAHASNIVFAIFIATGQDPAQNFESSHCITMMEAINDGRDLHILVTMPSIELRLLATIVVGSVLAGELSLMSAITAG*

>Glyma04g33335.2   sequence type=predicted peptide   gene model=Glyma04g33335   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVIGIFGNYCLDKKPAAVNWIEGRGKSVVCEAIIKEVVQVLKTNVSALVELNMLKNLVGSTIAGALGGFNAHASNIVFAIFIATGQDPAQNFESSHCITMMEAINDGRDLHILVTMPSIELRLLATIVVGSVLAGELSLMSAITAG*






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