Glyma04g33270 - SoyBase

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Report for Sequence Feature Glyma04g33270

Feature Type:	gene_model
Chromosome:	Gm04
Start:	38776490
stop:	38778616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g33270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61430	AT	Annotation by Michelle Graham. TAIR10: NAC domain containing protein 100 \| chr5:24701328-24702553 REVERSE LENGTH=336	SoyBase	E_val: 1.00E-136	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_I1JWT3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JWT3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q52QR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein NAC5 n=1 Tax=Glycine max RepID=Q52QR1_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma04g33270

Locus	Gene Symbol	Protein Name
	NAC017	NAC Transcription Factor gene 17

Expression Patterns of Glyma04g33270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g33270

Paralog	Evidence	Comments
Glyma06g21020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g33270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g167200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g33270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g33270

Limit To All Plant Sequences

>Glyma04g33270.1   sequence type=CDS   gene model=Glyma04g33270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACGTTTCAGTTCTTCTATGTAATAAGGAAAAGGATCAGATGGATTTGCCTCCTGGGTTTAGGTTTCACCCAACTGATGAAGAGCTAATTAGTCATTACCTTTACAGAAAGGTCACCCACACCAACTTCTCAGCTAGGGCCATTGGAGAGGTGGACTTGAACAGGTCTGAGCCTTGGGATTTGCCATGGAAAGCTAAAATGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGTTTGAGGACTAATAGAGCCACTCAATCAGGATACTGGAAGGCCACAGGGAAAGACAAAGAGATTTTCAGAGGAAAATCCCTTGTGGGTATGAAGAAAACTTTGGTTTTCTACAAAGGAAGGGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAGTATAGACTTGATGGAAAATTCTCTGTTCACAACCTCCCCAAAACTGCGAAGAATGAGTGGGTGATTTGCAGGGTTTTTCAGAAGAGTTCAGGTGTGAAGAGGACTCATATTTCTGGGATGATGATGTTGGACTCTTATGGAAACGAATTGGGTTATTCTTCTTCTGCTTTGCCACCTCTCACTGATTCCTCACCTTCCATTGACAACACCAAAGTACTGAGTGTTACTGATACGGCTTACGTACCCTGCTTCTCCAATCCAATTGATGCTCCAAGAGGGATCTTCGATTCCTTGAACAACATTAACATCACCACCACCACCACTACCAACAACAACAACACCCTTTATGGAGTTTCTTCAAACCATTCATTTTACAATACTCAACTTCATATTCCACCAACTTTGCCATTACCTAGTTCTTCAAACCATTACCTTAGAGCCTTTCTTGAAAACCAAGGAAATGGATCAAACATGAGGAATAATGGTTATGAAACAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAACTATTTCTACTGATGTGAACGCTGAAATCTCTTCATTGGGTAAAAGGCAATTTGAGAATCAGCAGAATCCAACTGCTTCATCAGCTGTTGTTCCAATGGACGTTGCTACCTTGTGGAACTACTGA

Predicted protein sequences of Glyma04g33270

Limit To All Plant Sequences

>Glyma04g33270.1   sequence type=predicted peptide   gene model=Glyma04g33270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENVSVLLCNKEKDQMDLPPGFRFHPTDEELISHYLYRKVTHTNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATQSGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKTDWVMHEYRLDGKFSVHNLPKTAKNEWVICRVFQKSSGVKRTHISGMMMLDSYGNELGYSSSALPPLTDSSPSIDNTKVLSVTDTAYVPCFSNPIDAPRGIFDSLNNINITTTTTTNNNNTLYGVSSNHSFYNTQLHIPPTLPLPSSSNHYLRAFLENQGNGSNMRNNGYETEREMVSVSQETTISTDVNAEISSLGKRQFENQQNPTASSAVVPMDVATLWNY*

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