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Report for Sequence Feature Glyma04g32821

Feature Type:gene_model
Chromosome:Gm04
Start:37944196
stop:37947810
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g32821
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13290AT Annotation by Michelle Graham. TAIR10: varicose-related | chr3:4297529-4303113 FORWARD LENGTH=1340 SoyBaseE_val: 4.00E-49ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
PTHR15598Panther AUTOANTIGEN RCD8 JGI ISS
PTHR15598:SF5Panther gb def: CG6181-PA, isoform A (Cg6181-pb, isoform b) (LD41624p) JGI ISS
UniRef100_A2Q5F8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidase S26A, signal peptidase I; WD40-like n=1 Tax=Medicago truncatula RepID=A2Q5F8_MEDTR SoyBaseE_val: 5.00E-70ISS
UniRef100_UPI0002337D32UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337D32 related cluster n=1 Tax=unknown RepID=UPI0002337D32 SoyBaseE_val: 2.00E-83ISS

Expression Patterns of Glyma04g32821
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32821 not represented in the dataset
Glyma04g32821 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g32821 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g164600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g32821
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g32821
>Glyma04g32821.1   sequence type=CDS   gene model=Glyma04g32821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCTGTATTGGAGAAAATCATTAAGAAGGAAATATCTTCAATTGGAACAACCATTACTCATTTAATTAGTCAAGTTATAGAGAAAACTATATCATCTGCTATTGCAAAATCATTCCAAAAGGGGGTGGGAGACAAGGCATTGAATCAACTAGAAAAATCAATTAGTTCAAAACTTGAAGCTATAGTGGCTAGGCAGATACATGCACAATTTCAAACCTCTAGCAAGCAAGCTCTTCAGGAAGCACTCAAGACTAGTGTGGAAGCTTCAGTCGTTCCCACATTTGAGATGTCTTGCAAGGCTTTGTTTGACCAAATTGATATCAAATTTCAAAATGGACTTGTGAAGCACACAATTGATACAATTAATTCAGCATCATCAATCACTCAAACTTTGAGTGGACAATTGACTGATGGCCAACGTAAACTATTAGCAATTGCAACTAATTCCAAAGTAGCTACAGATCCCTTTGTAGCATAA
Predicted protein sequences of Glyma04g32821
>Glyma04g32821.1   sequence type=predicted peptide   gene model=Glyma04g32821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSVLEKIIKKEISSIGTTITHLISQVIEKTISSAIAKSFQKGVGDKALNQLEKSISSKLEAIVARQIHAQFQTSSKQALQEALKTSVEASVVPTFEMSCKALFDQIDIKFQNGLVKHTIDTINSASSITQTLSGQLTDGQRKLLAIATNSKVATDPFVA*






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