SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07910 | AT | Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr5:2521937-2523769 REVERSE LENGTH=262 | SoyBase | E_val: 6.00E-124 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR23155 | Panther | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | JGI | ISS | |
| PTHR23155:SF273 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PTHR26343 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR26343:SF51 | Panther | JGI | ISS | ||
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_B9RLR8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RLR8_RICCO | SoyBase | E_val: 8.00E-145 | ISS |
| UniRef100_I1JWQ3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWQ3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g32680 not represented in the dataset |
Glyma04g32680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g21790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g164100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g32680.2 sequence type=transcript gene model=Glyma04g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGGGAAATAAAACCCACCCAACCCAACACAACACAACACACCCGGGTACAACGCTACGCCTAGTTTGGTCTTGGGTGGGACAACAAAGCGCAAAGAAAAACGCGGTTTTTGTTCCTCCTGCTCTCTCTGACTCTGTCTCGGTGCAGCAAAAACCTTCCTTCTTCATCAATTCCACGAACTCAAACAACAAATAATTCATTCTTTCAAATTTCAATTCTAACATAGAAATAAGAATAAAAATGGGTTGTTTCGCCAGCAAAAACGCTGACACCAAGGCCAGTAGGGCTGCGCGTTGGCGATCCACGGGCATTGTTGCTTTGCGCGATTCCAAATTAAAGACGTTTCCGGATGAAATTCTTGAGTTAGACACATCTGTTCGCACTCTTGACTTGACGCATAATCGGATAGTTGACATTCCGGTGGAAATCAGCAAATTAATTAATGTACAGCGCCTGATATTAGCGGAGAACCTCATTGAGAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTGAAACTGATGAACCTGGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTGGAACGCATATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACCATTGGAAGTTTGAGAAATCTGGTGCTTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTTGGTGTGCAATCTTTCTCACTTGAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGAATCTGAGTCCAGGATTTCTTATGGGAAGCATAAGCTTACAAGTTACTTGAATGAGTGGTTTACTTAATGCTTGGAGTTATTTCTATCCACCAAGTTAACTACCATCACTGAGATATACATGTTGTACAGTAATGGTTTGACTTAGCTGTAAGGATGTATAAAATCAATGACAAATTTGCTTTGCCATTATAATAAGCTATACCTGTTTCTCTTTGCATTGGTTTGGTCTGAGGGAAATGCATATAGTTTGCCAGAAAAATTTGTTGCTTGAATATCAGGAATATCCAGTTGCATTTCCACTCATACGCATGGGCACTTGGGCAGTTACTCATTACAAGCATTTGTAAGAGGTGATCAAGTGGTGCAGCATTACTGAGTTGATATTTAGAATTGTAATATTTTTAAACCATACATGTTAAATTGTAGCATTGACATTGAAATACATATTTCATACGGACTAGAATTCCTGTTGATGGGTTTGGACTC
>Glyma04g32680.1 sequence type=CDS gene model=Glyma04g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGTTTCGCCAGCAAAAACGCTGACACCAAGGCCAGTAGGGCTGCGCGTTGGCGATCCACGGGCATTGTTGCTTTGCGCGATTCCAAATTAAAGACGTTTCCGGATGAAATTCTTGAGTTAGACACATCTGTTCGCACTCTTGACTTGACGCATAATCGGATAGTTGACATTCCGGTGGAAATCAGCAAATTAATTAATGTACAGCGCCTGATATTAGCGGAGAACCTCATTGAGAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTGAAACTGATGAACCTGGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTGGAACGCATATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACCATTGGAAGTTTGAGAAATCTGGTGCTTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTTGGTGTGCAATCTTTCTCACTTGAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGATACCTCTGAATTTATTGAAAGACTGCATTGCTCTTCAGAACATATCACTGCATGGTAATCCTATATCAATGGATCAATTTCAGCAGATGGAGGGGTTTCAAGAGTTTGAAGCAAGGAGGAAAAAGAAGTTTGACAAACAAATTGATTCAAATGTGATGATCGGTTCCAAAGGTCTTGATGAGGGTGTTGATCTATGA >Glyma04g32680.2 sequence type=CDS gene model=Glyma04g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGTTTCGCCAGCAAAAACGCTGACACCAAGGCCAGTAGGGCTGCGCGTTGGCGATCCACGGGCATTGTTGCTTTGCGCGATTCCAAATTAAAGACGTTTCCGGATGAAATTCTTGAGTTAGACACATCTGTTCGCACTCTTGACTTGACGCATAATCGGATAGTTGACATTCCGGTGGAAATCAGCAAATTAATTAATGTACAGCGCCTGATATTAGCGGAGAACCTCATTGAGAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTGAAACTGATGAACCTGGATGGAAATCGAATTACTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTGGAACGCATATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACCATTGGAAGTTTGAGAAATCTGGTGCTTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGATAATCTTATTGAAGATCTTCCCTCTTTGGTGTGCAATCTTTCTCACTTGAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGAATCTGAGTCCAGGATTTCTTATGGGAAGCATAAGCTTACAAGTTACTTGA
>Glyma04g32680.1 sequence type=predicted peptide gene model=Glyma04g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCFASKNADTKASRAARWRSTGIVALRDSKLKTFPDEILELDTSVRTLDLTHNRIVDIPVEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSLVCNLSHLKSLCLDNNNVKQIPLNLLKDCIALQNISLHGNPISMDQFQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDL* >Glyma04g32680.2 sequence type=predicted peptide gene model=Glyma04g32680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCFASKNADTKASRAARWRSTGIVALRDSKLKTFPDEILELDTSVRTLDLTHNRIVDIPVEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRITSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVLLNVSNNKLQSLPESVGSCFSLEELQANDNLIEDLPSLVCNLSHLKSLCLDNNNVKQNLSPGFLMGSISLQVT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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