SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g32620): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g32620): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g32620

Feature Type:gene_model
Chromosome:Gm04
Start:37580838
stop:37581710
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g32620
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G33530AT Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 46 | chr2:14197866-14200536 REVERSE LENGTH=465 SoyBaseE_val: 1.00E-54ISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004185GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity SoyBaseN/AISS
PTHR11802Panther SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE JGI ISS
PTHR11802:SF8Panther SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS) JGI ISS
PF00450PFAM Serine carboxypeptidase JGI ISS
UniRef100_G7LIS1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase n=1 Tax=Medicago truncatula RepID=G7LIS1_MEDTR SoyBaseE_val: 4.00E-61ISS
UniRef100_UPI0002339355UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339355 related cluster n=1 Tax=unknown RepID=UPI0002339355 SoyBaseE_val: 3.00E-87ISS

Expression Patterns of Glyma04g32620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32620 not represented in the dataset
Glyma04g32620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g32620 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g163900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g32620
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g32620
>Glyma04g32620.1   sequence type=CDS   gene model=Glyma04g32620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACCAGAGTATGTAATTATTCTAGGTACGTTATGAGTCAAGTGAACAGAGAAACCCGTAAATTTATGCACAAATATGATGTCACGCTTGATGTTTGTATTTCCTTAGTGCTATCACAATCCAAAGTTATTTGTCCTCAATCCCAAGAAGAAAATGAGAGCATAGATGTGTGTAAAGATGACAAGGTTACAAACTACTTAAACTGGAGAGATGTACAAGAAAAACTTCATGCAAAGCTCGTTGGCGTTCGCAAGTGGGATGTTTGCAGTAACAACATACTGGATTATGATATGCTCAACCTAGAAGTGCCTACACTACTTGTTGTTGGATCCCTGATAAAATTTGGAGTTAAGGTCTTAATTTACAATGGAAATCAAGATTTTGTAATTCCACTAACTGGAAGTCGACCATAG
Predicted protein sequences of Glyma04g32620
>Glyma04g32620.1   sequence type=predicted peptide   gene model=Glyma04g32620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTRVCNYSRYVMSQVNRETRKFMHKYDVTLDVCISLVLSQSKVICPQSQEENESIDVCKDDKVTNYLNWRDVQEKLHAKLVGVRKWDVCSNNILDYDMLNLEVPTLLVVGSLIKFGVKVLIYNGNQDFVIPLTGSRP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo