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Report for Sequence Feature Glyma04g32540

Feature Type:gene_model
Chromosome:Gm04
Start:37349921
stop:37355361
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g32540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61150AT Annotation by Michelle Graham. TAIR10: leo1-like family protein | chr5:24603846-24607528 REVERSE LENGTH=625 SoyBaseE_val: 4.00E-177ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0009910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
KOG2428 KOG Uncharacterized conserved protein JGI ISS
PTHR23146Panther LEO1 PROTEIN JGI ISS
PF04004PFAM Leo1-like protein JGI ISS
UniRef100_B9I2V4UniRef Annotation by Michelle Graham. Most informative UniRef hit: PAF1 complex component n=1 Tax=Populus trichocarpa RepID=B9I2V4_POPTR SoyBaseE_val: 0ISS
UniRef100_I1JWP9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWP9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g32540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g32540
ParalogEvidenceComments
Glyma06g21900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g32540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g163400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g32540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g32540
>Glyma04g32540.1   sequence type=CDS   gene model=Glyma04g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGCGAGGAGAAGCGGCACCAGATGATGCAGAACCTCTTCGGAGACCAATCCGAGGAGGAGGAAGAGCTCGACGTTGATTCTGAGCACGAATCAAACCCGCAACTCAATTACCCCTCCGACGAGGGGGAGGGGGTGGGGGAGCAGGAGGGCGAGGTGGAGGGCCAGGGCGAGGTGGAGATCGAGAGCGACGGAGACGGTGAGCCCGACCGTGAGAGCGAGGGCGAGAGGGAGCAGAGCTCGCAGGAGGTGGAGGTTGTGGAGAGGGAAGAGGAGAGCGAGGGAAGAGACTCGGATAGTGATGCCAAGGACGGCGGGTATAGCCAGCATGGCGTCACGAGCAAGCGGAGGGACGACGTCGTGGAGAGCGGATCGGAGAGGTCCGAGGAAAATCAGTACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAGGACATCGGGTATGCAGTTCAGCAGGACATCAGACAAGATTCGAATAGATATGCTGTGGAGGAGGAAGGAAGTTACGGAAAGAACCTGAGACCTGAAGATATACTCGCTGATGAAGATAATCAGTATGAATCAGAGGATGAAAATATCGAGATAAAAACTAAGGAGAAGCCACTTGGCCCCCCCTTAGAGTTAGAGGTTCCATTACGACCACCTCCAGCTCTTCCAGAAAAGATGAACATGATTAAAGTTTCCAATATTATGGGTGTTGATCCAAAACCCTTTGATCCTAAAACATATGTGGAAGAGGATACTTTTGTAACTGATGAATCTGGAACCAGAAAACGCATACGTTTGGAGAACAATATTGTACGCTGGAGGACTACTAGAAATCCTGATGGCACAACATCTTGTGAAAGCAACGCTCGCTTTGTGAGATGGTCTGATGGCAGCCTGCAGCTATTAATTGGGAATGAAGTTCTTGACATATCAGTACAAGATGCACAGCATGATCAAGCACATCTTTTCCTTAGACATGGAAAGGGAATCCTCCAATCACAAGGAAGGTTATTAAGGAAAATGAGGTTTATGCCATCTTCCTTGTCATCAAATTCTCATCGGCTGCTGACTGCCCTTGTTGACTCAAGGCATAAGAAGGCTTTTAAGGTTAAAAACTGCATTACTGACATTGATCCTGAGCGGGAAAAAGAAGAAAAAGAGAAGGCTGAAAGTCAAAATATCCGTGCTAATGTGCTTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGGAGGATGAAGCAGACTATTATGATAATCATCGTTCTCAGCGCCGCTTTGAGGATGATTTGGAAGTGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGTCACGGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTGAGTATGAAACTGAGGAGGAGGAAGATGAGAGGCCTCCTTCACGTAAGAGGGATGAGGATACTGAGCCAGAGTATGAGGATGAGGAAGAAGAGGAAGAACACTATGAAGAAGCCGAACAAGTTAATGATGCATCAGATGATGGGGAAGAGGAGGAACCAAAGCAGAAGAGCAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGATGACTCTTCTCCAAGGAAAATAACCACCCATCGGCGGATGGCGGTTGTGTATGATAGTGATGAGGACTGA
Predicted protein sequences of Glyma04g32540
>Glyma04g32540.1   sequence type=predicted peptide   gene model=Glyma04g32540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGEEKRHQMMQNLFGDQSEEEEELDVDSEHESNPQLNYPSDEGEGVGEQEGEVEGQGEVEIESDGDGEPDRESEGEREQSSQEVEVVEREEESEGRDSDSDAKDGGYSQHGVTSKRRDDVVESGSERSEENQYAHHDDGEEVDEARSPSGSPRDEKDETRDLHAAPEIRDVFGDFDDDEEEDIGYAVQQDIRQDSNRYAVEEEGSYGKNLRPEDILADEDNQYESEDENIEIKTKEKPLGPPLELEVPLRPPPALPEKMNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGTRKRIRLENNIVRWRTTRNPDGTTSCESNARFVRWSDGSLQLLIGNEVLDISVQDAQHDQAHLFLRHGKGILQSQGRLLRKMRFMPSSLSSNSHRLLTALVDSRHKKAFKVKNCITDIDPEREKEEKEKAESQNIRANVLLNRKREKVNRKYTPAVERRRQLSPGFLEDALDEEDEADYYDNHRSQRRFEDDLEVEARAEKRIMNAKKSRGPKDIPRKSSFPPAKSSRNPMGYPDDEREESEYETEEEEDERPPSRKRDEDTEPEYEDEEEEEEHYEEAEQVNDASDDGEEEEPKQKSKEFRGSAKRKGFESDDDSSPRKITTHRRMAVVYDSDED*






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