Glyma04g32490 - SoyBase

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Report for Sequence Feature Glyma04g32490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	37316270
stop:	37318068
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74310	AT	Annotation by Michelle Graham. TAIR10: heat shock protein 101 \| chr1:27936715-27939862 REVERSE LENGTH=911	SoyBase	E_val: 4.00E-123	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0019538	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein metabolic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0043335	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein unfolding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
PTHR11638	Panther	ATP-DEPENDENT CLP PROTEASE	JGI		ISS
PTHR11638:SF50	Panther	HEAT SHOCK PROTEIN 101	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF07724	PFAM	AAA domain (Cdc48 subfamily)	JGI		ISS
UniRef100_C4YJT6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein 78, mitochondrial n=1 Tax=Candida albicans WO-1 RepID=C4YJT6_CANAW	SoyBase	E_val: 2.00E-136	ISS
UniRef100_C4YJT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Heat shock protein 78, mitochondrial n=1 Tax=Candida albicans WO-1 RepID=C4YJT6_CANAW	SoyBase	E_val: 2.00E-136	ISS

Expression Patterns of Glyma04g32490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32490 not represented in the dataset	Glyma04g32490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g32490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g32490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g32490

Limit To All Plant Sequences

>Glyma04g32490.1   sequence type=CDS   gene model=Glyma04g32490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGAAGACCTATGGAAGAGGCCTTGTGGAACAAGCCGGGAAGCTCGACCCTGTTATTGGAAGGGACGAGGAAATTCGAAGGTGGTGAGGATTTTATCTAGAAGGACGAAGAATAACCCGGTTTTGATTGAAGAACCGGGTGTGGGAAAGATTGCGGTGGTTGAAGGGTTGGCACAGAGGATTGTTAAAGGGAATGTTCCTAGCAATCTTTCTGATGTTAGGCTCATTGCATTGGACATGGGTGCATTGGTTGCGGCGGTTTTGAAGGAGGTGGAGGAGGCTGAGGGGAAGGTTATTTTGTTCATTGATGAGATTCATTTGGTTCTTGGTGCGGGGAAAGGTGAGGGTTCCATGGATGCTGCTAATTTGTTCAAGCCCATGCTTGCGAGGGGTCAATTGAGGTGTATCGGCGCCACCACACTTGAGGAGTATAGGCAGTATGAGGAGAAGGATGCTGCATTCGAGAGAAGGTTTCAGCAGGTGTTTGTGGCAGAACTGAGTGTTGTTGACACTATTAGTATACTTCGTGGGTTGAAAGAGAGATGTGAAGGTCACCATGGTGTTTGGATTCTGGGTCGTGCTTTGGTTCTAGCGGCTTATTTTTATTATTCATTAACTTGTTTAAACATCAAGGTCGACATCTTCCGGACAAAGCAAATTGATTTAGTTGATGAGGCTTGTGCCAATGTGAGAGTTCAACTTGATAGTCGGCCAGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGCTAGAAGTGGAACTTCATGCACTGGAGAAAGAGAAGGACAAAGCTAGTAAAGCTCGTTTGGTTGAACAACCAACTGGCTCCTTCTTGTTCTTGGGTCCAACTGGTGTTGGCAAGACTGAGCTTGCAAAGGCACTTGTGGAGCAACTCTTCGATGAAAAAAATCAATTGGTGAGAGTTGACATGTCTGAATACATGGAGCAGCACTCTGTTTCTCGATTGATCTGTGCACCACCAGGGTATGTTGGACATGAAGAAGGAGGTCAGCTAACAGAAGCTGTAAGGCGGAGGCCTTACAGTGTGTTACTCTTTAATGAAGTGGAAAAGGCACACACATCTGTGTTTAACACACTCCTTCAAGTCTTGGATGATGGGAGGTTAACTGATGGCCAAGGCCGTGCGGTGGACTTCAGAAACACTGTCATTATCATGACCTCTAACCTTGGTGCAGAGCATCTCCTCACTGGACTTTTTGGAAAATCTTCAATGCAAGTAGCTCGTGATAGAGTAATGCAAGTGGTATGTTTCTTGACACCATTTAATGGTGAAATGGAAGAATGA

Predicted protein sequences of Glyma04g32490

Limit To All Plant Sequences

>Glyma04g32490.1   sequence type=predicted peptide   gene model=Glyma04g32490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SEDLWKRPCGTSREARPCYWKGRGNSKVVRILSRRTKNNPVLIEEPGVGKIAVVEGLAQRIVKGNVPSNLSDVRLIALDMGALVAAVLKEVEEAEGKVILFIDEIHLVLGAGKGEGSMDAANLFKPMLARGQLRCIGATTLEEYRQYEEKDAAFERRFQQVFVAELSVVDTISILRGLKERCEGHHGVWILGRALVLAAYFYYSLTCLNIKVDIFRTKQIDLVDEACANVRVQLDSRPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEQPTGSFLFLGPTGVGKTELAKALVEQLFDEKNQLVRVDMSEYMEQHSVSRLICAPPGYVGHEEGGQLTEAVRRRPYSVLLFNEVEKAHTSVFNTLLQVLDDGRLTDGQGRAVDFRNTVIIMTSNLGAEHLLTGLFGKSSMQVARDRVMQVVCFLTPFNGEMEE*

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