Glyma04g32481 - SoyBase

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Report for Sequence Feature Glyma04g32481

Feature Type:	gene_model
Chromosome:	Gm04
Start:	37281448
stop:	37288322
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32481

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61090	AT	Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr5:24574902-24577585 REVERSE LENGTH=657	SoyBase	E_val: 5.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
UniRef100_Q9FNQ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF19536.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FNQ6_ARATH	SoyBase	E_val: 2.00E-18	ISS
UniRef100_UPI000233934F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233934F related cluster n=1 Tax=unknown RepID=UPI000233934F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g32481

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32481 not represented in the dataset	Glyma04g32481 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g32481

Paralog	Evidence	Comments
Glyma06g22041	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g32481 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g163100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g32481

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g32481

Limit To All Plant Sequences

>Glyma04g32481.2   sequence type=transcript   gene model=Glyma04g32481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGAGATTATGTTTCTGAGCATTTCTCTTTCTGAGCATTTCAACTTAACCCTTCCATTTATCATGGATGAAAATATATAACCTAGAAGAGAAGAAGACAAAGTTAAAATTGAAGTGTAAATATTAGGAAAAAGCGAAGACACAGAAAAACGCACGTCATCGAACCTTCACAATGCAGCCACCACCCAAGGAAAATGACAAGGCTGGAGTTTGTGATATATGTGGTGCTAGTGGATTTGATGAAACAATTGTTACTTGTTCTAAATGCAACATAAACTGTGAACATTCTTACTGCATGCGATTTAATACCTTAATAGTTCCTATAGACTGGATTTGTGAGCCTTGCAAATCCAAGGATGTTTCGACTTCACCACATGAAGTGAATCAGGGTATTGGCTTGAGGGCTTCTAAAATGCGACAGCCTGTCAAAACAGGGAAAGTGAAGTTCCTTCCCGAGGATGAAGTCCTTAGACTTTATTCTGGCAATTTTCCCTTGGCAACAACCCGGAAAACTTCTGTTGGGTCCAAAAATGTTGTTTCAAAGATTCCCTCACAGACTCCAAAACCATATCCTTGCATATCACCTCCTAAAGTACTTGGGAAGCTTTCAAGAAATGATGAAGTACACAAGAAGTCAATGACTAATCAACATGCTTCTTGCTCATTATCAAAAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGGGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACTAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCCTCCCATATTGTCGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGAGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACAAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCTTCCCATATTGTTGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGGATGGAGTGATACCTGGTAAAAAAGTTCAAACCCATGATGCTCAGAAAGAAAATCCTACAAAAGGGGCACCATTTGAAGCTTTATCAGCAGGAAAATCTTCCCCTATTGTCGATTCAGGTGATATCCGCCGTGCTGATGCTGAATGTAACAAATCTAATATTGAAAAAAGTGATCTTCGGAGTGTTCAGGAAAACTTAAACCTTCATTGTAAATTTTTACCCTCTTCATTTCCTGCTTGGAGGGGTCAATTCCAAATTCTTCAGACTGCTGTATCTAGTGAATTTTATGATGGGCTTGAGGCCCAACCACCATGCATTGTTAACAAGAAAGCATACAAATTTTCAACAGAAATGCCATCAGTCCTTCAACTGGAGTCACTTCCTGTGTTGAATGCCTTGACTGACATATTCCAGGATAATTCTCCTAGGCTTCAGGATATTGCATTGTATTTCTTTCCATCAGAACTTACTGAGAGGTCCAGAAAGAACCTGGATAGCATATTGAAGTTTTTGAATGCTGAGAAATCAATGCTGAGAAGTTATATTAATGGAGTAGAGTTGCTGGTATTTACCTCAAATCAACTTGACATGGACTCAAAGGGTGCTATAGCTGCAGTAAATGCTGGACATTTCCTGTGGGGAATGTTTCGCCAAAAGAAAATTGATAAAGCTATTGAAAGAGTGCCTGACATGGAGCCAGTTGATATGGACATCGATATGATTGGAGGAAAGGATGTGGTGGAGAGAGCTGATGTCGTTCGAAATTGTAAACCTAAGAGTGCCTCTTTGATGGAGGATTATAACAAACTGGACGTTCCTCCAGGCTTTGAAGAATTTACCAAAATGTCTAAATGAAAATTTGCTGCAGAAAACCAGCACATGATTTGTGAGACCTTGCATATAGTGTAGTGGGCAACCTCAAATTCTGAAGAGACTTAACGAATTCAATTAAAACATCATCATGGTATTGGTATACTGGTGTAGTAAAAAATTATAGTTAGCTTGTATGTTCAGTTTCTGAACTCAGTTAAAATATCATCAGGATTTGGTATACTGCTACAGTCAGAAATCGTAGCTAGCTTGTTTGTTCAGTTTCTGAACTTAGTTAAAATATCATCAGGCATTGGTATACTACTATAGTTAGCTTGCTTGTACAGTTTCTGAACTCATTCTGACCAGGAGTTTGCACATGGCCTATGAATATATCAATGGAAGAATAGAATGTGCATTTGCATA

Coding sequences of Glyma04g32481

Limit To All Plant Sequences

>Glyma04g32481.1   sequence type=CDS   gene model=Glyma04g32481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCCACCACCCAAGGAAAATGACAAGGCTGGAGTTTGTGATATATGTGGTGCTAGTGGATTTGATGAAACAATTGTTACTTGTTCTAAATGCAACATAAACTGTGAACATTCTTACTGCATGCGATTTAATACCTTAATAGTTCCTATAGACTGGATTTGTGAGCCTTGCAAATCCAAGGATGTTTCGACTTCACCACATGAAGTGAATCAGGGTATTGGCTTGAGGGCTTCTAAAATGCGACAGCCTGTCAAAACAGGGAAAGTGAAGTTCCTTCCCGAGGATGAAGTCCTTAGACTTTATTCTGGCAATTTTCCCTTGGCAACAACCCGGAAAACTTCTGTTGGGTCCAAAAATGTTGTTTCAAAGATTCCCTCACAGACTCCAAAACCATATCCTTGCATATCACCTCCTAAAGTACTTGGGAAGCTTTCAAGAAATGATGAAGTACACAAGAAGTCAATGACTAATCAACATGCTTCTTGCTCATTATCAAAAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGGGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACTAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCCTCCCATATTGTCGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGAGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACAAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCTTCCCATATTGTTGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGAGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACAAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCTTCCCATATTGTTGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGGATGGAGTGATACCTGGTAAAAAAGTTCAAACCCATGATGCTCAGAAAGAAAATCCTACAAAAGGGGCACCATTTGAAGCTTTATCAGCAGGAAAATCTTCCCCTATTGTCGATTCAGGTGATATCCGCCGTGCTGATGCTGAATGTAACAAATCTAATATTGAAAAAAGTGATCTTCGGAGTGTTCAGGAAAACTTAAACCTTCATTGTAAATTTTTACCCTCTTCATTTCCTGCTTGGAGGGGTCAATTCCAAATTCTTCAGACTGCTGTATCTAGTGAATTTTATGATGGGCTTGAGGCCCAACCACCATGCATTGTTAACAAGAAAGCATACAAATTTTCAACAGAAATGCCATCAGTCCTTCAACTGGAGTCACTTCCTGTGTTGAATGCCTTGACTGACATATTCCAGGATAATTCTCCTAGGCTTCAGGATATTGCATTGTATTTCTTTCCATCAGAACTTACTGAGAGGTCCAGAAAGAACCTGGATAGCATATTGAAGTTTTTGAATGCTGAGAAATCAATGCTGAGAAGTTATATTAATGGAGTAGAGTTGCTGGTATTTACCTCAAATCAACTTGACATGGACTCAAAGGGTGCTATAGCTGCAGTAAATGCTGGACATTTCCTGTGGGGAATGTTTCGCCAAAAGAAAATTGATAAAGCTATTGAAAGAGTGCCTGACATGGAGCCAGTTGATATGGACATCGATATGATTGGAGGAAAGGATGTGGTGGAGAGAGCTGATGTCGTTCGAAATTGTAAACCTAAGAGTGCCTCTTTGATGGAGGATTATAACAAACTGGACGTTCCTCCAGGCTTTGAAGAATTTACCAAAATGTCTAAATGA

>Glyma04g32481.2   sequence type=CDS   gene model=Glyma04g32481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCCACCACCCAAGGAAAATGACAAGGCTGGAGTTTGTGATATATGTGGTGCTAGTGGATTTGATGAAACAATTGTTACTTGTTCTAAATGCAACATAAACTGTGAACATTCTTACTGCATGCGATTTAATACCTTAATAGTTCCTATAGACTGGATTTGTGAGCCTTGCAAATCCAAGGATGTTTCGACTTCACCACATGAAGTGAATCAGGGTATTGGCTTGAGGGCTTCTAAAATGCGACAGCCTGTCAAAACAGGGAAAGTGAAGTTCCTTCCCGAGGATGAAGTCCTTAGACTTTATTCTGGCAATTTTCCCTTGGCAACAACCCGGAAAACTTCTGTTGGGTCCAAAAATGTTGTTTCAAAGATTCCCTCACAGACTCCAAAACCATATCCTTGCATATCACCTCCTAAAGTACTTGGGAAGCTTTCAAGAAATGATGAAGTACACAAGAAGTCAATGACTAATCAACATGCTTCTTGCTCATTATCAAAAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGGGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACTAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCCTCCCATATTGTCGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGAGTGGAGTGATACCTGGTAAAAAAGTCCAAACCGGTGATGCTCAGAAAGAAAATCCTACAAAAGGGCCTTTTGAAGCTTTATCAGCAGGAAAATCTTCCCATATTGTTGGTTCAGGACCGCCAAAGGAGTGTATAGGAGAAAATCAGCTACCCTTGGATGGAGTGATACCTGGTAAAAAAGTTCAAACCCATGATGCTCAGAAAGAAAATCCTACAAAAGGGGCACCATTTGAAGCTTTATCAGCAGGAAAATCTTCCCCTATTGTCGATTCAGGTGATATCCGCCGTGCTGATGCTGAATGTAACAAATCTAATATTGAAAAAAGTGATCTTCGGAGTGTTCAGGAAAACTTAAACCTTCATTGTAAATTTTTACCCTCTTCATTTCCTGCTTGGAGGGGTCAATTCCAAATTCTTCAGACTGCTGTATCTAGTGAATTTTATGATGGGCTTGAGGCCCAACCACCATGCATTGTTAACAAGAAAGCATACAAATTTTCAACAGAAATGCCATCAGTCCTTCAACTGGAGTCACTTCCTGTGTTGAATGCCTTGACTGACATATTCCAGGATAATTCTCCTAGGCTTCAGGATATTGCATTGTATTTCTTTCCATCAGAACTTACTGAGAGGTCCAGAAAGAACCTGGATAGCATATTGAAGTTTTTGAATGCTGAGAAATCAATGCTGAGAAGTTATATTAATGGAGTAGAGTTGCTGGTATTTACCTCAAATCAACTTGACATGGACTCAAAGGGTGCTATAGCTGCAGTAAATGCTGGACATTTCCTGTGGGGAATGTTTCGCCAAAAGAAAATTGATAAAGCTATTGAAAGAGTGCCTGACATGGAGCCAGTTGATATGGACATCGATATGATTGGAGGAAAGGATGTGGTGGAGAGAGCTGATGTCGTTCGAAATTGTAAACCTAAGAGTGCCTCTTTGATGGAGGATTATAACAAACTGGACGTTCCTCCAGGCTTTGAAGAATTTACCAAAATGTCTAAATGA

Predicted protein sequences of Glyma04g32481

Limit To All Plant Sequences

>Glyma04g32481.1   sequence type=predicted peptide   gene model=Glyma04g32481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPPPKENDKAGVCDICGASGFDETIVTCSKCNINCEHSYCMRFNTLIVPIDWICEPCKSKDVSTSPHEVNQGIGLRASKMRQPVKTGKVKFLPEDEVLRLYSGNFPLATTRKTSVGSKNVVSKIPSQTPKPYPCISPPKVLGKLSRNDEVHKKSMTNQHASCSLSKGPPKECIGENQLPLGGVIPGKKVQTGDAQKENPTKGPFEALSAGKSSHIVGSGPPKECIGENQLPLSGVIPGKKVQTGDAQKENPTKGPFEALSAGKSSHIVGSGPPKECIGENQLPLSGVIPGKKVQTGDAQKENPTKGPFEALSAGKSSHIVGSGPPKECIGENQLPLDGVIPGKKVQTHDAQKENPTKGAPFEALSAGKSSPIVDSGDIRRADAECNKSNIEKSDLRSVQENLNLHCKFLPSSFPAWRGQFQILQTAVSSEFYDGLEAQPPCIVNKKAYKFSTEMPSVLQLESLPVLNALTDIFQDNSPRLQDIALYFFPSELTERSRKNLDSILKFLNAEKSMLRSYINGVELLVFTSNQLDMDSKGAIAAVNAGHFLWGMFRQKKIDKAIERVPDMEPVDMDIDMIGGKDVVERADVVRNCKPKSASLMEDYNKLDVPPGFEEFTKMSK*

>Glyma04g32481.2   sequence type=predicted peptide   gene model=Glyma04g32481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPPPKENDKAGVCDICGASGFDETIVTCSKCNINCEHSYCMRFNTLIVPIDWICEPCKSKDVSTSPHEVNQGIGLRASKMRQPVKTGKVKFLPEDEVLRLYSGNFPLATTRKTSVGSKNVVSKIPSQTPKPYPCISPPKVLGKLSRNDEVHKKSMTNQHASCSLSKGPPKECIGENQLPLGGVIPGKKVQTGDAQKENPTKGPFEALSAGKSSHIVGSGPPKECIGENQLPLSGVIPGKKVQTGDAQKENPTKGPFEALSAGKSSHIVGSGPPKECIGENQLPLDGVIPGKKVQTHDAQKENPTKGAPFEALSAGKSSPIVDSGDIRRADAECNKSNIEKSDLRSVQENLNLHCKFLPSSFPAWRGQFQILQTAVSSEFYDGLEAQPPCIVNKKAYKFSTEMPSVLQLESLPVLNALTDIFQDNSPRLQDIALYFFPSELTERSRKNLDSILKFLNAEKSMLRSYINGVELLVFTSNQLDMDSKGAIAAVNAGHFLWGMFRQKKIDKAIERVPDMEPVDMDIDMIGGKDVVERADVVRNCKPKSASLMEDYNKLDVPPGFEEFTKMSK*

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