Glyma04g32401 - SoyBase

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Report for Sequence Feature Glyma04g32401

Feature Type:	gene_model
Chromosome:	Gm04
Start:	37072499
stop:	37077327
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32401

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74220	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: N	SoyBase	E_val: 6.00E-16	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KD18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD18_SOYBN	SoyBase	E_val: 4.00E-154	ISS

Expression Patterns of Glyma04g32401

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32401 not represented in the dataset	Glyma04g32401 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g32401

Paralog	Evidence	Comments
Glyma06g22193	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g32401 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g162200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g32401

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g32401

Limit To All Plant Sequences

>Glyma04g32401.2   sequence type=transcript   gene model=Glyma04g32401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGCATGGCAGCGGAAGTTTGTGAGTTGTGGAAAATACCAGAGATTGAAACGGCTAATTGGCTAAACTTGTGCAATGCCTTCTCCTTTATTTAACCCTTTCTTGTTGTATCTTCTCTCTCTTTTTCTCTCTGCTCACTTTCTTCAAACTTTTTTTACGCTTTTTCTGGATTTCCTGCATCTTTGTTCGTACATTGTTGTGATTCAGACAATGCCATCAGAGGCCTAGTAAATAGCAGGAGCAGGCAACTGGATCATTTGGGCACATTACTTTTCATTATATGGTTTTTCATTTGAGATTCTGCTTTTACAGAATATCCATACCCTGAATGAATATTACTTGACATTGTTGGCTGATGGAATCCATAAGTAACAGTGGATCTAGTGTTGATATGAGAACTAGTCCTTCTACAAATTCAGGTGAAGGAGAACAATTTAACAAAGAAAAGAAACAAGTAGCCTCCTTTTCACCCTTTTCATCAGAGTTGAAATCACAAGATCACTTTGACCTTATGCCAAATACAACAACCACTACAACTCATCCTAGACCTTTTGGTGCAACCTCTCCTACACGTGACCAAACATGCTCACAGTCTGAATTGCATAACACACATTTAGTGGCAGAAAAGGGTGGCGGAAGGCCAATTGATAGCCATGTGGAAGCACATTCTTCTAACCCTTTTGGTGAAGCTAATCCTTCTCCAATGGAAAATAACACAGCCCCCACCAACACTAAACATGTTGGTGCATCTGAATCTGAAAAGGAGCATGACCATACTAGTGAAAGTGCATTTCCTGCTGATGGTATGCTAGGCCCCCATTCATCATTGGCACCATCCACAAATGAATCATCACAAGGGAATCCCTTCAAAGTTCCTCCCACGAGTGAAACGAGAAAGAACACTAATGTTGGTGAAGCTGACTTGGTGAAAGTTGATGAACAATTTGATCATGGCAGTGAATCACATCATAGACTACCATCACCGGAGCAAGGTCATTGGAGCGTGCCTAGTAGTGAAGCATGGACACATCCTACTAACACACATGGTGAAACTCATGTTCCCTCTTCAAGCCAACAATTAGACCCCTTGTTCACATTGGAATCAGCACAAAATCAACAACAAGCTGATGCAACTTCTAAGAACCATGCAGGTGCTACTACTATTCCCACAAGCGTTGAACCGCATCATACCTTTTCAGTTGCAGGACAAGGACATCAAAGCAAGGCTGATAGCAATTCAGTAACAGATAACAAGTCAGACTCATCAGTTTTATCATTTTCCCCGGCTTCTGAATCTTCAACTCAAGACCACAAGCATAATTCTGCAAATGCAGCCACTAACACACACGGTGAAACTCATGTTCCCTCTTCAAGCCAACAATTCGACCCCTGGTTCACATTGGAATCAGTACAAAACCAACAAGAAGCTGATGCAACTTCTAAGAACCATGGAGGTGCTACTACTATCCCAACAAGTGTCGAACTGCATCATACCTTTTCAGTTACAGAACAAGGATATCATACCAAGGCTAGTAGCAATTCAGTAACAGATAACAAGTCAGGCTCATCAGTTTCATCATTTTCCCCATCTTCTGAATCTTCTACTCAAGACCACATGCATAATTCTGCAATTGCAGTCACTAAAGCACCTCAAAAACGGGGAAAAGATGTTAAGTTTGCTTCAGAATTCAGTGATGATGATATCCCAATCAGCTCTTATCCAAAACATGGACGGCAAGGTAGTGATGGTGCAGGACAATACTCATCAGCAGGTGTTGCTCCTGGCACAAGCAACGGCTCAGAAAAGCAAAATCCTTCACTGCAGGTGATGGAGAGTCCGGATAATCCTACAATTTCTTCAAACTATAGGTTTCCATCACATGTGTTTGATAGACACAAATCAAAATCAAACACTCAATGGAGCACTGCCTCTAATGAATCATTGTTCAGCATTCAAATGGGAAATACGAGTTTCTCGAATGACATGGCTTGGATGAGCAAATCTGGTGATATGGATAGACCTGGTGACATGAACTCGTCTGGCGCATTTCCTCCAAGCAATCAGCCCCCATTCCCACCTCAATCCCAACCCCAACCTCAATCTCAACCTCAACCTCCAGTAACAAAATTCAATGATATCAGCCAATGCACTGCAAAACAACATGAAGTTTCAAGAGTGACTGAACAAAAAGCTGCTGAGACAATGAGAGAGGTTATAATGGAAAACAGTATAAAAAGAGACAGTGTAATCAAAGGAGATTTGATACCTGATCGTGGGGCAGCACCTTCCAATAAGCGTTCTACTTCTAATGCTCATTCTCACCAATCAGACGGGAGCACCAAATCCTTTGCGTTTAATGTATTGGCAGATGGAGACAAACCTCTTTCACCAAAACATGGTGAAGAGAAGAGAAAGCAGCAGAAACAGCCAGGGCAGCTTAACATTAGACCAACACCAGATGCAGCAGCTCAGAATCCCAAGTCAACCCCAAATGCTTCTCAGAACAAATCATGGTTTTCCTGCTTCTCATGCTGTTAATTAGAACGCATTAGATCACCATCTGATCATAGAGTCTCTCTTGGCTTCTACCAAAACCATTTTATTGTCTAAATCACCTTGATAGTTTAGTATCAAGCACATGCACTTCATAGTTGGGAAATCAGACACAAATATTCTGATTAACAACGTAACATTTGATAGCACTCTTGGTAGATAAATGGATCAACAGAAACAATCTAGGGTCCAGGGATTCCATAGAAAATTATTTTTAGATGGCACACTAAAACACATGCACAAGTGTGCAAGGTCACACAAATTTTCTGTGGCACGTGA

Coding sequences of Glyma04g32401

Limit To All Plant Sequences

>Glyma04g32401.1   sequence type=CDS   gene model=Glyma04g32401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCATAAGTAACAGTGGATCTAGTGTTGATATGAGAACTAGTCCTTCTACAAATTCAGGTGAAGGAGAACAATTTAACAAAGAAAAGAAACAAGTAGCCTCCTTTTCACCCTTTTCATCAGAGTTGAAATCACAAGATCACTTTGACCTTATGCCAAATACAACAACCACTACAACTCATCCTAGACCTTTTGGTGCAACCTCTCCTACACGTGACCAAACATGCTCACAGTCTGAATTGCATAACACACATTTAGTGGCAGAAAAGGGTGGCGGAAGGCCAATTGATAGCCATGTGGAAGCACATTCTTCTAACCCTTTTGGTGAAGCTAATCCTTCTCCAATGGAAAATAACACAGCCCCCACCAACACTAAACATGTTGGTGCATCTGAATCTGAAAAGGAGCATGACCATACTAGTGAAAGTGCATTTCCTGCTGATGGTATGCTAGGCCCCCATTCATCATTGGCACCATCCACAAATGAATCATCACAAGGGAATCCCTTCAAAGTTCCTCCCACGAGTGAAACGAGAAAGAACACTAATGTTGGTGAAGCTGACTTGGTGAAAGTTGATGAACAATTTGATCATGGCAGTGAATCACATCATAGACTACCATCACCGGAGCAAGGTCATTGGAGCGTGCCTAGTAGTGAAGCATGGACACATCCTACTAACACACATGGTGAAACTCATGTTCCCTCTTCAAGCCAACAATTAGACCCCTTGTTCACATTGGAATCAGCACAAAATCAACAACAAGCTGATGCAACTTCTAAGAACCATGCAGGTGCTACTACTATTCCCACAAGCGTTGAACCGCATCATACCTTTTCAGTTGCAGGACAAGGACATCAAAGCAAGGCTGATAGCAATTCAGTAACAGATAACAAGTCAGACTCATCAGTTTTATCATTTTCCCCGGCTTCTGAATCTTCAACTCAAGACCACAAGCATAATTCTGCAAATGCAGCCACTAACACACACGGTGAAACTCATGTTCCCTCTTCAAGCCAACAATTCGACCCCTGGTTCACATTGGAATCAGTACAAAACCAACAAGAAGCTGATGCAACTTCTAAGAACCATGGAGGTGCTACTACTATCCCAACAAGTGTCGAACTGCATCATACCTTTTCAGTTACAGAACAAGGATATCATACCAAGGCTAGTAGCAATTCAGTAACAGATAACAAGTCAGGCTCATCAGTTTCATCATTTTCCCCATCTTCTGAATCTTCTACTCAAGACCACATGCATAATTCTGCAATTGCAGTCACTAAAGCACCTCAAAAACGGGGAAAAGATGTTAAGTTTGCTTCAGAATTCAGTGATGATGATATCCCAATCAGCTCTTATCCAAAACATGGACGGCAAGGTAGTGATGGTGCAGGACAATACTCATCAGCAGGTGTTGCTCCTGGCACAAGCAACGGCTCAGAAAAGCAAAATCCTTCACTGCAGGTGATGGAGAGTCCGGATAATCCTACAATTTCTTCAAACTATAGGTTTCCATCACATGTGTTTGATAGACACAAATCAAAATCAAACACTCAATGGAGCACTGCCTCTAATGAATCATTGTTCAGCATTCAAATGGGAAATACGAGTTTCTCGAATGACATGGCTTGGATGAGCAAATCTGGTGATATGGATAGACCTGGTGACATGAACTCGTCTGGCGCATTTCCTCCAAGCAATCAGCCCCCATTCCCACCTCAATCCCAACCCCAACCTCAATCTCAACCTCAACCTCCAGTAACAAAATTCAATGATATCAGCCAATGCACTGCAAAACAACATGAAGTTTCAAGAGTGACTGAACAAAAAGCTGCTGAGACAATGAGAGAGGTTATAATGGAAAACAGTATAAAAAGAGACAGTGTAATCAAAGGAGATTTGATACCTGATCGTGGGGCAGCACCTTCCAATAAGCGTTCTACTTCTAATGCTCATTCTCACCAATCAGACGGGAGCACCAAATCCTTTGCGTTTAATGTATTGGCAGATGGAGACAAACCTCTTTCACCAAAACATGGTGAAGAGAAGAGAAAGCAGCAGAAACAGCCAGGGCAGCTTAACATTAGACCAACACCAGATGCAGCAGCTCAGAATCCCAAGTCAACCCCAAATGCTTCTCAGAACAAATCATGGTTTTCCTGCTTCTCATGCTGTTAA

>Glyma04g32401.2   sequence type=CDS   gene model=Glyma04g32401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCATAAGTAACAGTGGATCTAGTGTTGATATGAGAACTAGTCCTTCTACAAATTCAGGTGAAGGAGAACAATTTAACAAAGAAAAGAAACAAGTAGCCTCCTTTTCACCCTTTTCATCAGAGTTGAAATCACAAGATCACTTTGACCTTATGCCAAATACAACAACCACTACAACTCATCCTAGACCTTTTGGTGCAACCTCTCCTACACGTGACCAAACATGCTCACAGTCTGAATTGCATAACACACATTTAGTGGCAGAAAAGGGTGGCGGAAGGCCAATTGATAGCCATGTGGAAGCACATTCTTCTAACCCTTTTGGTGAAGCTAATCCTTCTCCAATGGAAAATAACACAGCCCCCACCAACACTAAACATGTTGGTGCATCTGAATCTGAAAAGGAGCATGACCATACTAGTGAAAGTGCATTTCCTGCTGATGGTATGCTAGGCCCCCATTCATCATTGGCACCATCCACAAATGAATCATCACAAGGGAATCCCTTCAAAGTTCCTCCCACGAGTGAAACGAGAAAGAACACTAATGTTGGTGAAGCTGACTTGGTGAAAGTTGATGAACAATTTGATCATGGCAGTGAATCACATCATAGACTACCATCACCGGAGCAAGGTCATTGGAGCGTGCCTAGTAGTGAAGCATGGACACATCCTACTAACACACATGGTGAAACTCATGTTCCCTCTTCAAGCCAACAATTAGACCCCTTGTTCACATTGGAATCAGCACAAAATCAACAACAAGCTGATGCAACTTCTAAGAACCATGCAGGTGCTACTACTATTCCCACAAGCGTTGAACCGCATCATACCTTTTCAGTTGCAGGACAAGGACATCAAAGCAAGGCTGATAGCAATTCAGTAACAGATAACAAGTCAGACTCATCAGTTTTATCATTTTCCCCGGCTTCTGAATCTTCAACTCAAGACCACAAGCATAATTCTGCAAATGCAGCCACTAACACACACGGTGAAACTCATGTTCCCTCTTCAAGCCAACAATTCGACCCCTGGTTCACATTGGAATCAGTACAAAACCAACAAGAAGCTGATGCAACTTCTAAGAACCATGGAGGTGCTACTACTATCCCAACAAGTGTCGAACTGCATCATACCTTTTCAGTTACAGAACAAGGATATCATACCAAGGCTAGTAGCAATTCAGTAACAGATAACAAGTCAGGCTCATCAGTTTCATCATTTTCCCCATCTTCTGAATCTTCTACTCAAGACCACATGCATAATTCTGCAATTGCAGTCACTAAAGCACCTCAAAAACGGGGAAAAGATGTTAAGTTTGCTTCAGAATTCAGTGATGATGATATCCCAATCAGCTCTTATCCAAAACATGGACGGCAAGGTAGTGATGGTGCAGGACAATACTCATCAGCAGGTGTTGCTCCTGGCACAAGCAACGGCTCAGAAAAGCAAAATCCTTCACTGCAGGTGATGGAGAGTCCGGATAATCCTACAATTTCTTCAAACTATAGGTTTCCATCACATGTGTTTGATAGACACAAATCAAAATCAAACACTCAATGGAGCACTGCCTCTAATGAATCATTGTTCAGCATTCAAATGGGAAATACGAGTTTCTCGAATGACATGGCTTGGATGAGCAAATCTGGTGATATGGATAGACCTGGTGACATGAACTCGTCTGGCGCATTTCCTCCAAGCAATCAGCCCCCATTCCCACCTCAATCCCAACCCCAACCTCAATCTCAACCTCAACCTCCAGTAACAAAATTCAATGATATCAGCCAATGCACTGCAAAACAACATGAAGTTTCAAGAGTGACTGAACAAAAAGCTGCTGAGACAATGAGAGAGGTTATAATGGAAAACAGTATAAAAAGAGACAGTGTAATCAAAGGAGATTTGATACCTGATCGTGGGGCAGCACCTTCCAATAAGCGTTCTACTTCTAATGCTCATTCTCACCAATCAGACGGGAGCACCAAATCCTTTGCGTTTAATGTATTGGCAGATGGAGACAAACCTCTTTCACCAAAACATGGTGAAGAGAAGAGAAAGCAGCAGAAACAGCCAGGGCAGCTTAACATTAGACCAACACCAGATGCAGCAGCTCAGAATCCCAAGTCAACCCCAAATGCTTCTCAGAACAAATCATGGTTTTCCTGCTTCTCATGCTGTTAA

Predicted protein sequences of Glyma04g32401

Limit To All Plant Sequences

>Glyma04g32401.1   sequence type=predicted peptide   gene model=Glyma04g32401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESISNSGSSVDMRTSPSTNSGEGEQFNKEKKQVASFSPFSSELKSQDHFDLMPNTTTTTTHPRPFGATSPTRDQTCSQSELHNTHLVAEKGGGRPIDSHVEAHSSNPFGEANPSPMENNTAPTNTKHVGASESEKEHDHTSESAFPADGMLGPHSSLAPSTNESSQGNPFKVPPTSETRKNTNVGEADLVKVDEQFDHGSESHHRLPSPEQGHWSVPSSEAWTHPTNTHGETHVPSSSQQLDPLFTLESAQNQQQADATSKNHAGATTIPTSVEPHHTFSVAGQGHQSKADSNSVTDNKSDSSVLSFSPASESSTQDHKHNSANAATNTHGETHVPSSSQQFDPWFTLESVQNQQEADATSKNHGGATTIPTSVELHHTFSVTEQGYHTKASSNSVTDNKSGSSVSSFSPSSESSTQDHMHNSAIAVTKAPQKRGKDVKFASEFSDDDIPISSYPKHGRQGSDGAGQYSSAGVAPGTSNGSEKQNPSLQVMESPDNPTISSNYRFPSHVFDRHKSKSNTQWSTASNESLFSIQMGNTSFSNDMAWMSKSGDMDRPGDMNSSGAFPPSNQPPFPPQSQPQPQSQPQPPVTKFNDISQCTAKQHEVSRVTEQKAAETMREVIMENSIKRDSVIKGDLIPDRGAAPSNKRSTSNAHSHQSDGSTKSFAFNVLADGDKPLSPKHGEEKRKQQKQPGQLNIRPTPDAAAQNPKSTPNASQNKSWFSCFSCC*

>Glyma04g32401.2   sequence type=predicted peptide   gene model=Glyma04g32401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESISNSGSSVDMRTSPSTNSGEGEQFNKEKKQVASFSPFSSELKSQDHFDLMPNTTTTTTHPRPFGATSPTRDQTCSQSELHNTHLVAEKGGGRPIDSHVEAHSSNPFGEANPSPMENNTAPTNTKHVGASESEKEHDHTSESAFPADGMLGPHSSLAPSTNESSQGNPFKVPPTSETRKNTNVGEADLVKVDEQFDHGSESHHRLPSPEQGHWSVPSSEAWTHPTNTHGETHVPSSSQQLDPLFTLESAQNQQQADATSKNHAGATTIPTSVEPHHTFSVAGQGHQSKADSNSVTDNKSDSSVLSFSPASESSTQDHKHNSANAATNTHGETHVPSSSQQFDPWFTLESVQNQQEADATSKNHGGATTIPTSVELHHTFSVTEQGYHTKASSNSVTDNKSGSSVSSFSPSSESSTQDHMHNSAIAVTKAPQKRGKDVKFASEFSDDDIPISSYPKHGRQGSDGAGQYSSAGVAPGTSNGSEKQNPSLQVMESPDNPTISSNYRFPSHVFDRHKSKSNTQWSTASNESLFSIQMGNTSFSNDMAWMSKSGDMDRPGDMNSSGAFPPSNQPPFPPQSQPQPQSQPQPPVTKFNDISQCTAKQHEVSRVTEQKAAETMREVIMENSIKRDSVIKGDLIPDRGAAPSNKRSTSNAHSHQSDGSTKSFAFNVLADGDKPLSPKHGEEKRKQQKQPGQLNIRPTPDAAAQNPKSTPNASQNKSWFSCFSCC*

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