Glyma04g32204 - SoyBase

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Report for Sequence Feature Glyma04g32204

Feature Type:	gene_model
Chromosome:	Gm04
Start:	36623131
stop:	36625352
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32204

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11060	AT	Annotation by Michelle Graham. TAIR10: WAPL (Wings apart-like protein regulation of heterochromatin) protein \| chr1:3684568-3689537 FORWARD LENGTH=930	SoyBase	E_val: 2.00E-14	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF07814	PFAM	Wings apart-like protein regulation of heterochromatin	JGI		ISS
UniRef100_F4I7C7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WAPL (Wings apart-like protein regulation of heterochromatin) protein n=1 Tax=Arabidopsis thaliana RepID=F4I7C7_ARATH	SoyBase	E_val: 8.00E-12	ISS
UniRef100_UPI000233A38D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A38D related cluster n=1 Tax=unknown RepID=UPI000233A38D	SoyBase	E_val: 1.00E-72	ISS

Expression Patterns of Glyma04g32204

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32204 not represented in the dataset	Glyma04g32204 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g32204 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g160500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g32204

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g32204

Limit To All Plant Sequences

>Glyma04g32204.2   sequence type=transcript   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCACCACCGTTCGGTAAAAATGGTTGGTATTTCAAAATGATTTCCCGAAAACTGTCTTAAAACTTAAAAGGTTATTCTAAATGATGGAGGTTGGGATTACGAGAGGTTAGGGCATTTTGATTTTTCATTGTCTACTCTTCTTTGATTCTATCACAATAACCCATACATTTCAAATTTAAAACCCTCTAAATCAATTTATACTATCCGGAAACCTCCTTGGCGCACTATCGTGGCAATTTCAGGCCGCCACATACGGCGGCACCTTATAGTTCCTCACCCTTGGCCGGCCTTTGCAGTTTAGCTTCTTCCGACACGATGGTTGAGGTCGATTTCAGTATAGCCTTCGAGAATAATGACGAAACTAGATCTGCGACTATAGAACCAGATCTGCTACCAGACGGTGGTGGTGGGAGTTATCGTGGGTGCGGGTGAAAGAAAATGCGAAGAGAAACAAAAGTGGTGGTGCGCACGCAGTGGTCGTGGAGTTGGCCGTGTTGGTATAATTTGAACCTTAGGTGAATGCACTTGATTTCTTCCGAGAAGAATTCCATTGAGCAACTTGTGATTGCCTTAAGTGCAGAGTCATGTGCAAGTGTGGCTCTTGTGGTACAAGAAAGCATACACTTAGTGAATGGGAAAAACATACAGGTTACAGAGCGAAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAACTACCAATGGAAAAATGGTTAGTGTATTTATGAATGATGAAAGAAGCTATGGGCAATATGAGCATCACTATTATTGTGTATTTGACTGGATATGCTTTTGTTTTTCAAGGCCAAGATGATCACCTCCTTGAATCACTTGGTTCTATTCAATTTCTGATGAAGTTGTTAAAACCAATTGTCTCCACAACAAAATTTGGCTATAAACTTTTATCATTGCGTCAGAATGATGACATGTTGAAAAATACGACTATGACGGGAAGATTGGATTCCAGTTCTGCAGAAGTTTTTTCTAGAGTTCAAGAAATTCTAGTAAATTGCAAAGAACTGAAAACATGTCAGAATGACAGTAGGGGGAGAGACCAGAGTTATGCGAAAATGGTTAGCATTGCTGACTATGGAAAAGGCTTGTTTGTCTGCCATTTCTCTTGATTAAACCAGTGGTGTTGTACGGAAGGCTGGTGGAAATTTCAAGGAAAAATTAACGGAGCATGGCGGACTCGATGCAGTCTTTGAAGTCACCATAACTTGTCATTCATATTTGGATGTGTTAGCTTGTATGTTAGTTCATATATATGCCTTGTTATATTTGTAGTAGATATAACTTTGGCCAAAAGAAATTGACAGAGACAATTAAAACAAAGTATTT

>Glyma04g32204.3   sequence type=transcript   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCACCACCGTTCGGTAAAAATGGTTGGTATTTCAAAATGATTTCCCGAAAACTGTCTTAAAACTTAAAAGGTTATTCTAAATGATGGAGGTTGGGATTACGAGAGGTTAGGGCATTTTGATTTTTCATTGTCTACTCTTCTTTGATTCTATCACAATAACCCATACATTTCAAATTTAAAACCCTCTAAATCAATTTATACTATCCGGAAACCTCCTTGGCGCACTATCGTGGCAATTTCAGGCCGCCACATACGGCGGCACCTTATAGTTCCTCACCCTTGGCCGGCCTTTGCAGTTTAGCTTCTTCCGACACGATGGTTGAGGTCGATTTCAGTATAGCCTTCGAGAATAATGACGAAACTAGATCTGCGACTATAGAACCAGATCTGCTACCAGACGGTGGTGGTGGGAGTTATCGTGGGTGCGGGTGAAAGAAAATGCGAAGAGAAACAAAAGTGGTGGTGCGCACGCAGTGGTCGTGGAGTTGGCCGTGTTGGTATAATTTGAACCTTAGGTGAATGCACTTGATTTCTTCCGAGAAGAATTCCATTGAGCAACTTGTGATTGCCTTAAGTGCAGAGTCATGTGCAAGTGTGGCTCTTGTGGTACAAGAAAGCATACACTTAGTGAATGGGAAAAACATACAGGTTACAGAGCGAAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAACTACCAATGGAAAAATGGTTAGTGTATTTATGAATGATGAAAGAAGCTATGGGCAATATGAGCATCACTATTATTGTGTATTTGACTGGATATGCTTTTGTTTTTCAAGGCCAAGATGATCACCTCCTTGAATCACTTGGTTCTATTCAATTTCTGATGAAGTTGTTAAAACCAATTGTCTCCACAACAAAATTTGGCTATAAACTTTTATCATTGCGTCAGAATGATGACATGTTGAAAAATACGACTATGACGGGAAGATTGGATTCCAGTTCTGCAGAAGTTTTTTCTAGAGTTCAAGAAATTCTAGTAAATTGCAAAGAACTGAAAACATGTCAGAATGACAGTAGGGGGAGAGACCAGAGTTATGCGAAAATGGTTAGCATTGCTGACTATGGAAAAGGCTTGTTTGTCTGCCATTTCTCTTGATTGTATCGTAAAGGACATTTATTTCCAGTTTGTATTATTGGCTGAAGATGTTCTTTTCCCTCTATTATATTGTGTTCTTTTAAATGCCAATATTGGTATTTTTGCTCAAAAATAATGCAGACAACCAAATCTATTCATTTATATTTTATACTGGTTTAGTGTTTAAAATCATTGGGGATGAGTTAATGAGGTGCCATCTTGATTTTGAAATACAAACAAAAGTAATGAGTTCTCAGAACAGTGGCGCTTAATTTGATGGAATCTGGTTTGTTTATATACTAGGGGGCTAATATATTCTGAATTGTATATCAGTGGTGTTTGTTTATGTGAATTCCCATCCCAAATTAATTAGGATTATGCCTTTTTCACTTGTAAATTATGATTTATGTGGTATTCTTTCTCCTCAAAAGTTATAGTTGATCAGGAACTAACTTCAATAGGCGTTGCAATGCTCCGTGATCCTGCTGACTGTATATATTCTTTTATGAAACCTCTCTATTGGAACATCTTTTGAGTATTCTTTTATATTTTCTTTGGATGTTTT

Coding sequences of Glyma04g32204

Limit To All Plant Sequences

>Glyma04g32204.1   sequence type=CDS   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAATTCCATTGAGCAACTTGTGATTGCCTTAAGTGCAGAGTCATGTGCAAGTGTGGCTCTTGTGGTACAAGAAAGCATACACTTAGTGAATGGGAAAAACATACAGGTTACAGAGCGAAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAACTACCAATGGAAAAATGGGCCAAGATGATCACCTCCTTGAATCACTTGGTTCTATTCAATTTCTGATGAAGTTGTTAAAACCAATTGTCTCCACAACAAAATTTGGCTATAAACTTTTATCATTGCGTCAGAATGATGACATGTTGAAAAATACGACTATGACGGGAAGATTGGATTCCAGTTCTGCAGAAGTTTTTTCTAGAGTTCAAGAAATTCTAGTAAATTGCAAAGAACTGAAAACATGTCAGAATGACAGTAGGGGGAGAGACCAGAGTTATGCGAAAATGGTTAGCATTGCTGACTATGGAAAAGGCTTGTTTGTCTGCCATTTCTCTTGA

>Glyma04g32204.2   sequence type=CDS   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAAGAAGCTATGGGCAATATGAGCATCACTATTATTGTGTATTTGACTGGATATGCTTTTGTTTTTCAAGGCCAAGATGATCACCTCCTTGAATCACTTGGTTCTATTCAATTTCTGATGAAGTTGTTAAAACCAATTGTCTCCACAACAAAATTTGGCTATAAACTTTTATCATTGCGTCAGAATGATGACATGTTGAAAAATACGACTATGACGGGAAGATTGGATTCCAGTTCTGCAGAAGTTTTTTCTAGAGTTCAAGAAATTCTAGTAAATTGCAAAGAACTGAAAACATGTCAGAATGACAGTAGGGGGAGAGACCAGAGTTATGCGAAAATGGTTAGCATTGCTGACTATGGAAAAGGCTTGTTTGTCTGCCATTTCTCTTGA

>Glyma04g32204.3   sequence type=CDS   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAAAGAAGCTATGGGCAATATGAGCATCACTATTATTGTGTATTTGACTGGATATGCTTTTGTTTTTCAAGGCCAAGATGATCACCTCCTTGAATCACTTGGTTCTATTCAATTTCTGATGAAGTTGTTAAAACCAATTGTCTCCACAACAAAATTTGGCTATAAACTTTTATCATTGCGTCAGAATGATGACATGTTGAAAAATACGACTATGACGGGAAGATTGGATTCCAGTTCTGCAGAAGTTTTTTCTAGAGTTCAAGAAATTCTAGTAAATTGCAAAGAACTGAAAACATGTCAGAATGACAGTAGGGGGAGAGACCAGAGTTATGCGAAAATGGTTAGCATTGCTGACTATGGAAAAGGCTTGTTTGTCTGCCATTTCTCTTGA

Predicted protein sequences of Glyma04g32204

Limit To All Plant Sequences

>Glyma04g32204.1   sequence type=predicted peptide   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNSIEQLVIALSAESCASVALVVQESIHLVNGKNIQVTERKKWKHSVKVKSTTTNGKMGQDDHLLESLGSIQFLMKLLKPIVSTTKFGYKLLSLRQNDDMLKNTTMTGRLDSSSAEVFSRVQEILVNCKELKTCQNDSRGRDQSYAKMVSIADYGKGLFVCHFS*

>Glyma04g32204.2   sequence type=predicted peptide   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKEAMGNMSITIIVYLTGYAFVFQGQDDHLLESLGSIQFLMKLLKPIVSTTKFGYKLLSLRQNDDMLKNTTMTGRLDSSSAEVFSRVQEILVNCKELKTCQNDSRGRDQSYAKMVSIADYGKGLFVCHFS*

>Glyma04g32204.3   sequence type=predicted peptide   gene model=Glyma04g32204   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMKEAMGNMSITIIVYLTGYAFVFQGQDDHLLESLGSIQFLMKLLKPIVSTTKFGYKLLSLRQNDDMLKNTTMTGRLDSSSAEVFSRVQEILVNCKELKTCQNDSRGRDQSYAKMVSIADYGKGLFVCHFS*

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