Glyma04g32180 - SoyBase

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Report for Sequence Feature Glyma04g32180

Feature Type:	gene_model
Chromosome:	Gm04
Start:	36610561
stop:	36614404
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60940	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr5:24523757-24525655 FORWARD LENGTH=337	SoyBase	E_val: 5.00E-143	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0640	KOG	mRNA cleavage stimulating factor complex; subunit 1	JGI		ISS
PTHR22840	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR22840:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9RLL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cleavage stimulation factor 50 kDa subunit, putative n=1 Tax=Ricinus communis RepID=B9RLL1_RICCO	SoyBase	E_val: 8.00E-171	ISS
UniRef100_I1KD31	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD31_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g32180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g32180

Paralog	Evidence	Comments
Glyma06g22360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g32180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g160300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g32180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g32180

Limit To All Plant Sequences

>Glyma04g32180.3   sequence type=transcript   gene model=Glyma04g32180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGAGTCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACAAATGCAAAGAGAGCATACATGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTTCATCCTTCAGGAGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCGGCAAATATCCCAGACACTAGCCCCAGTGGAGCCATAAACCAGGTCAGATATTCTTGTAGGCTCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCATAGGTTTATTCTCTCTTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAATCAAACAATATCTGGGAGCTATGCATACGCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTAAGCAATGAGATTGTTATCTGGGATGCAATAACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGTAAACTGTATAGTATAAGGGGAAGGAAACTGAATGCATACACAGGCGCTAATTGAAGAAATTAACTCAGGGATTTTCACCTTTTTTGTTTTTTTTTTTTTTAATTTCTGGTAGCAGGCTTGCCCTGCAGAATCGTTTAATGCATTCAACGCTTGGAATTGGAAGATTGTCTATCTATGGTGATGTGATGTGCTCAATCTTTCAAGCAATTCTTAATAACTATTTGTGTTTCATATTCCATA

Coding sequences of Glyma04g32180

Limit To All Plant Sequences

>Glyma04g32180.2   sequence type=CDS   gene model=Glyma04g32180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCCCAAAGAGCTTCCTGAAGCACGAAACGCGGCACCTTTCGGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTGCTGATGGAAGATTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGTTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTATCATACGAACATATTATGATCATATACAAGACACACACAATGTTCGATCTGTATCTTTTCATCCTTCAGGAGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCGGCAAATATCCCAGACACTAGCCCCAGTGGAGCCATAAACCAGGCATATATTCTTGTAGGCTCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCATAGGTTTATTCTCTCTTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAATCAAACAATATCTGGGAGCTATGCATACGCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTAAGCAATGAGATTGTTATCTGGGATGCAATAACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGTAA

>Glyma04g32180.3   sequence type=CDS   gene model=Glyma04g32180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCATAGGTTTATTCTCTCTTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAATCAAACAATATCTGGGAGCTATGCATACGCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTAAGCAATGAGATTGTTATCTGGGATGCAATAACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGTAA

Predicted protein sequences of Glyma04g32180

Limit To All Plant Sequences

>Glyma04g32180.2   sequence type=predicted peptide   gene model=Glyma04g32180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FPKSFLKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPIIRTYYDHIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPDTSPSGAINQAYILVGSMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDHRFILSCGKDSTIKLWEVGSGRLIKQYLGAMHTQLRCQAIFNETEEFILSIDELSNEIVIWDAITTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWK*

>Glyma04g32180.3   sequence type=predicted peptide   gene model=Glyma04g32180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDHRFILSCGKDSTIKLWEVGSGRLIKQYLGAMHTQLRCQAIFNETEEFILSIDELSNEIVIWDAITTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWK*

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