Glyma04g32120 - SoyBase

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Report for Sequence Feature Glyma04g32120

Feature Type:	gene_model
Chromosome:	Gm04
Start:	36528998
stop:	36531446
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15630	AT	Annotation by Michelle Graham. TAIR10: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family \| chr5:5084842-5086545 FORWARD LENGTH=431	SoyBase	E_val: 0	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009834	GO-bp	Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
PF04833	PFAM	COBRA-like protein	JGI		ISS
UniRef100_I0IJY8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COBRA-like protein n=2 Tax=Eucalyptus RepID=I0IJY8_9MYRT	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A955	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A955 related cluster n=1 Tax=unknown RepID=UPI000233A955	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g32120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g32120

Paralog	Evidence	Comments
Glyma06g22430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g32120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g160000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g32120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g32120

Limit To All Plant Sequences

>Glyma04g32120.2   sequence type=CDS   gene model=Glyma04g32120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGGTGCCACACTAGGCCTAGTGATTCTGTTTACTTCATCTTCAGGCATGGAATTTGTTAACGGTAAACAGCAGCCAAAGAGCACATTTACATGCTTGAAGTTGGTTGCCTTAATTGCTCTATACCTCGTCTTAATTTCTCCAGCAGAATCATTTGATCCGTTGGATCCAACCGGGAACGTGACAATAAGATGGGATATAATGTCCTGGACATCAGATGGTTATTTGGCCACTGTGACATTGTTTAACTTCCAACTATACCGCAATATTATGAATCCTGGGTGGACACTAGGGTGGACATGGGCAAAGAAGGAAATAATCTGGGCCATGATGGGAGCTCAAGCCACAGAACAAGGAGATTGTGCAAAGTTCAAGTTGAAGATTCCTCATAGCTGCAAGAGGAACCCTCAAGTGGTTGACTTGCTACCTGGAGCTCCTTTTAACACGCAGTTCACAAACTGCTGCAAGGGTGGTGTGCTTACATCTTGGGGGCAGAACCCTTCAGGTGCAGTCTCAGCATTTCAGATAGGTGTTGGCCTCTCTGGCACCTCTAACAAGACAGTCAAATTGCCCAAAAACTTCAAATTGCTAGGACCAGGACCAGGATACTCATGTGGCCCAGCCAAGATTGTTCCATCCACTGCCATCCTCACAGAAGATCGTAGGCGAAAAATGCAAGCACTGATGTCCTGGAATGTGACATGCACGTACTCACAGTTTCTTGCCTCCAAGAATCCAAGCTGTTGTGTTTCTTTGTCATCTTTCTACAGTGACAAAGTCACAGGTTGCCCACCTTGTGCTTGTGGTTGTCAAAATAACGATACTTGTGTCACGAAAGATTCAAAGATCCTGCAACAGAATGTCACGTCACCTCACCAAAAATCAGACATCACACTCACACCAAAACCATTATTACAATGCACACACCACCTGTGTCATGTCAGGGTGCACTGGCATTTGAAAGACAACTATAAGGACTATTGGCGTGTCAAGATTGCCATCATCAACTTCAACTATCGGTTGAATTTCACCGATTGGTCTCTTGTTGTGCAGCACCCTAATCTCAATAATGTCACCCAAGTCTACAGCTTTGAATACATGCCACTTCTTCCCTATGAATCCACAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTGCAGTCTGAGGTGCTCATGAAGAAGGACAAGAACACATTTACTCTCAAGCAGGGATGGGCATTTCCTAGGAGGGTCTACTTCAATGGTGATGAATGTATGCTGCCACCTCCTGATTCATATCCTATGCTGCCAAACTCTGCCCATAAACTACCAACAACTATTACATTGATGGCAGCCTATGTGGTTTTTACATTATTCTTTCATTTGGTTGTAACACTTTTTTGA

Predicted protein sequences of Glyma04g32120

Limit To All Plant Sequences

>Glyma04g32120.2   sequence type=predicted peptide   gene model=Glyma04g32120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGATLGLVILFTSSSGMEFVNGKQQPKSTFTCLKLVALIALYLVLISPAESFDPLDPTGNVTIRWDIMSWTSDGYLATVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGDCAKFKLKIPHSCKRNPQVVDLLPGAPFNTQFTNCCKGGVLTSWGQNPSGAVSAFQIGVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKIVPSTAILTEDRRRKMQALMSWNVTCTYSQFLASKNPSCCVSLSSFYSDKVTGCPPCACGCQNNDTCVTKDSKILQQNVTSPHQKSDITLTPKPLLQCTHHLCHVRVHWHLKDNYKDYWRVKIAIINFNYRLNFTDWSLVVQHPNLNNVTQVYSFEYMPLLPYESTNDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAHKLPTTITLMAAYVVFTLFFHLVVTLF*

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