SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g32105

Feature Type:gene_model
Chromosome:Gm04
Start:36506429
stop:36507847
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g32105
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23020AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8177215-8179743 REVERSE LENGTH=842 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G7ZY78UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7ZY78_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1L7C5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1L7C5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g32105
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32105 not represented in the dataset
Glyma04g32105 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g32105 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g159900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g32105
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g32105
>Glyma04g32105.1   sequence type=CDS   gene model=Glyma04g32105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGCACCCTCGCCAGAGCACGCAAGTGGGACCTCGTGGAGAGTTTGTGGACCGAAATGAATGCGAAAGGGGTTGCCCCTGTGAATTCCACTTATGGGACCTTGATTGATGCTTATAGTAAACGTGGAATCAAAGAGGAAGCACTTGCTTGGCTTCAGACGATGCAAAGTCAAGGAATAGAGCCTGATGAGGTCACCATAGGGATTGTTGTTCTCTTGTACAAGAGGGCTGGAGAGTTTCAAAAAGCTCAAGAGTTTTTCAGGAGATGGATAAGAGGTGCACCTTTTAGATTAGGTGTGGATGATAAATTAGTATCACATACCAATGTTTGTTTAAGCTCTCATACATATGCTACCTTGATTGACACGTATGGGAAGGGTGGTCAATTTCGCATAGCATGTGAAACGTTTACTAGGATCATCAGACAAGGCAGATCCCTGAATACAGTTACACTCAATACAATGATTCACTTGTATGGAAACTGTGGACGGTTACGACAAGCTTGTTTGTTGTTCCAGAAAATGGGAGAGTTTCGGTGTGTACCCGACACTTGGACGTATAACATCCTTATTTCTCTTAATATTAAGAATAATAAGGTCAAATTTGCAGTTAAATATTTTGCAAGGATGAAAGAGGCCTTCATTAAGGCAGACGTTGGGAGTTACCAAACCCTGTTGTATGCATACTCGACTAGGAAAATGGTTCGAGAAGCGGAAGAGCTCATACAGGAGATGGGCAAAAGGGATCTTGAGATTGATGAATTCACCCAATCGGCATTGACTAGAATGTATGTAGAATCAGGTATGCTTGAGCAGTCGTCGTTGTGGTTCAAGAGGTTTCACCTAGCTGGAAATATCAATTCGGATTGTTATTCTGCCAATATTGATGCATATGGAGAGCGGGGGTATACTTTAGCAGCCGAGAAAGTCTTTATTTGCTGCAAAGAAAAGAAGAAGCTCACTGTCCTTGAGTTTAATGTGACGATTAAGGCTTACGGGATAGGAAAATGCTATGATAAAGCATGTCAATTGTTTGATAGTATGAAAAAATTTGGTGTTGTTGCAGACAAATGCAGCTACAGTTCTCTCATTCATATTTTGGCCAGTGCTGACAAGCCACACATTGCCAAATCTTATCTTAAAAAAATGCAGGAGGCAGGACTTGTGAGTGACTGTGTCCCATACTGTGTTGTGATATCAAGCTTCACAAAGTTAGGCCAATTTGAAATGGCAGAAGAATTATACAAGGAAATGCTTCGATATGCCGTCCAACCTGATGTCATTATTTATGGTGTTTTTATCAATGCTTTTGCTGATGCTGGAAGTGTTAAAGAAGCCATCAATTATGTTAACGAAATAAGAAAGGCAGGACTGCCAGGGAATCCAACTATACAAGTTGATTCAATTATCAGATGA
Predicted protein sequences of Glyma04g32105
>Glyma04g32105.1   sequence type=predicted peptide   gene model=Glyma04g32105   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCTLARARKWDLVESLWTEMNAKGVAPVNSTYGTLIDAYSKRGIKEEALAWLQTMQSQGIEPDEVTIGIVVLLYKRAGEFQKAQEFFRRWIRGAPFRLGVDDKLVSHTNVCLSSHTYATLIDTYGKGGQFRIACETFTRIIRQGRSLNTVTLNTMIHLYGNCGRLRQACLLFQKMGEFRCVPDTWTYNILISLNIKNNKVKFAVKYFARMKEAFIKADVGSYQTLLYAYSTRKMVREAEELIQEMGKRDLEIDEFTQSALTRMYVESGMLEQSSLWFKRFHLAGNINSDCYSANIDAYGERGYTLAAEKVFICCKEKKKLTVLEFNVTIKAYGIGKCYDKACQLFDSMKKFGVVADKCSYSSLIHILASADKPHIAKSYLKKMQEAGLVSDCVPYCVVISSFTKLGQFEMAEELYKEMLRYAVQPDVIIYGVFINAFADAGSVKEAINYVNEIRKAGLPGNPTIQVDSIIR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo