SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G19600 | AT | Annotation by Michelle Graham. TAIR10: Cyclin family protein | chr4:10673619-10676532 FORWARD LENGTH=541 | SoyBase | E_val: 5.00E-37 | ISS |
| GO:0000079 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG0834 | KOG | CDK9 kinase-activating protein cyclin T | JGI | ISS | |
| PTHR10026 | Panther | CYCLIN | JGI | ISS | |
| PTHR10026:SF10 | Panther | CYCLIN-RLEATED | JGI | ISS | |
| UniRef100_G7JIR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-T1-5 n=1 Tax=Medicago truncatula RepID=G7JIR9_MEDTR | SoyBase | E_val: 5.00E-46 | ISS |
| UniRef100_I1NDG6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NDG6_SOYBN | SoyBase | E_val: 4.00E-97 | ISS |
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Glyma04g32090 not represented in the dataset |
Glyma04g32090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g32090.1 sequence type=CDS gene model=Glyma04g32090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGACCATTGCAACGGTCTATATGTTCCTTGCTGGGAAGGTTGAAGAGACTCCTCGTCCACTAAAGGATGTTATTCTTGTTTCTTATGAGATCATTCACAAGAAGGATCCTGCTGCTGCACAGAGGATAAAACAGAAGGAGAATACACAAACAATCATGGCAGCTAATTTGCTAACAGTTGACTGCTCACCAAGAGTGACCAAGATTAGCCTTTTGTGTTCCCTTGGTTTAATGCATTATGATCATTTCTGCCATTGTCACATATCTAGATGGTTTTATCCCTGTTTCCCGATCAAATTGGGAATTTTCATAAGAGAACTCAGTTTCCCGATCAAATTAGGAATTTTCATAAGAGAACTCAGTTTCCCGATCAAATTAGGAATTTTCATAAGAGAACTCAAGGTTTGCAATCAAATGTTGGAATTGTATGAGCAAAATAGACTTGCACCAGCACAGGGAAGTGAAGTAGAAGGAAGTGCTGGAGGAACAAGAGCTGCTTCAAAGGCTCCTTCTGCAAATGAGGAGCAGGCCTCAAAGCAAATATCATCTCAAGCCCCCCAGCACGAATCTGTAGACAGAATTGCGATACCACAAACAGGAACTGAGAACCAAAGCAACGATGGGAGTGCTTTGAGGACTGAACGTGACCAAGACAGAATTGTTGGGACTAAGCAGGGTCATTCACCCAATGAAGCAATCAAGATTGACAAGGATAAGTTAAAGGCACTAGCAGCTATGGGAGATAACAAAAAGGAACAACGAGGCAAAATGGCATTAAAGAAACATGTAATGGATGAGGATGATCTCATTGAGAAGGAGTTGGAAGATGGAATTGAATTAGCAGTCGAGGATGATAAA
>Glyma04g32090.1 sequence type=predicted peptide gene model=Glyma04g32090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high QTIATVYMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAAQRIKQKENTQTIMAANLLTVDCSPRVTKISLLCSLGLMHYDHFCHCHISRWFYPCFPIKLGIFIRELSFPIKLGIFIRELSFPIKLGIFIRELKVCNQMLELYEQNRLAPAQGSEVEGSAGGTRAASKAPSANEEQASKQISSQAPQHESVDRIAIPQTGTENQSNDGSALRTERDQDRIVGTKQGHSPNEAIKIDKDKLKALAAMGDNKKEQRGKMALKKHVMDEDDLIEKELEDGIELAVEDDK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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