Glyma04g32080 - SoyBase

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Report for Sequence Feature Glyma04g32080

Feature Type:	gene_model
Chromosome:	Gm04
Start:	36460046
stop:	36463059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g32080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08900	AT	Annotation by Michelle Graham. TAIR10: reversibly glycosylated polypeptide 3 \| chr3:2708347-2709714 REVERSE LENGTH=362	SoyBase	E_val: 0	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0033356	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-L-arabinose metabolic process	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030054	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell junction	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008466	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycogenin glucosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0016866	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity	SoyBase	N/A	ISS
GO:0052691	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-arabinopyranose mutase activity	SoyBase	N/A	ISS
PF03214	PFAM	Reversibly glycosylated polypeptide	JGI		ISS
UniRef100_I1JWM3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWM3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PW29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRP-like protein 2 n=1 Tax=Gossypium hirsutum RepID=Q0PW29_GOSHI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g32080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g32080 not represented in the dataset	Glyma04g32080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g32080

Paralog	Evidence	Comments
Glyma06g22440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g32080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g159700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g32080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g32080

Limit To All Plant Sequences

>Glyma04g32080.2   sequence type=transcript   gene model=Glyma04g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAACCGTTCCAGGGAGGTGAACGCACAATGAAAGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAAATTCTTTATACATGCGGCTCTAAGGAGGGCAGAGGATATGCCTATAGCTATCATTTTGCCTTTTTTTTTTTCTTTTCATATAACAATAAAACTTGAGTGGCTCCTCAATATTTTTTATATTTTGTTCAGGTTGGAATGTAGCTTATTGTTAAACTTTGAAATTTGATAGTGAGATTGTTGCTCTTGGGAAAGGCTTCCCATGCATTCGATTTACCTTTACCGTGACTGTTGTTGTTGGTTCCATCTTAG

Coding sequences of Glyma04g32080

Limit To All Plant Sequences

>Glyma04g32080.1   sequence type=CDS   gene model=Glyma04g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCGTCATCGGGAAGCACAGCAGCAGCAACGCCGATTCTGAAGGAGGAGGTGGACATAGTGATTCCCACGATACGTAACCTGGACTTCTTGGGGATGTGGAGGCCCTTCTTCGAGGGTTATCATTTGATAATAGTGCAGGACGGTGATCCTTCGAAGGTTATCAAGGTTCCTGAAGGGTTTGATTATGAACTCTACAACCGCAACGACATCAACCGCGTTCTTGGCCCCAGGGCACACTGCATCTCCTTCAAGGACTCTGCTTGCCGCTGCTTCGGCTTCTTGTTGTCTAAGAAAAAGTACATCTTCACCATCGACGATGACTGCTTCGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAA

>Glyma04g32080.2   sequence type=CDS   gene model=Glyma04g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAA

Predicted protein sequences of Glyma04g32080

Limit To All Plant Sequences

>Glyma04g32080.1   sequence type=predicted peptide   gene model=Glyma04g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSSGSTAAATPILKEEVDIVIPTIRNLDFLGMWRPFFEGYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRVLGPRAHCISFKDSACRCFGFLLSKKKYIFTIDDDCFVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGEGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSFPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNLSGVKSEALSNGPAK*

>Glyma04g32080.2   sequence type=predicted peptide   gene model=Glyma04g32080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGEGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSFPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNLSGVKSEALSNGPAK*

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