SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G42660 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr3:14751280-14755701 FORWARD LENGTH=953 | SoyBase | E_val: 0 | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0016570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone modification | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1274 | KOG | WD40 repeat protein | JGI | ISS | |
| PTHR19932 | Panther | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF12341 | PFAM | Protein of unknown function (DUF3639) | JGI | ISS | |
| UniRef100_G7IT11 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7IT11_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A946 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A946 related cluster n=1 Tax=unknown RepID=UPI000233A946 | SoyBase | E_val: 0 | ISS |
|
Glyma04g31220 not represented in the dataset |
Glyma04g31220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g22840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g158400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g31220.1 sequence type=CDS gene model=Glyma04g31220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCCGGTCGATGAAGCTGAAGGAGGCCCACGCCGCAAAGGGCGGCCCCGCGTCGTTCTGCTCCGTCCTGTGGGACCAGAAAGCGAAACACTTGGTCACCGCGTCCTCCTCCGACGTCGCCGTCTGCATCCACGACCCCCTTTTCCCCTCCTTCGCTCCAAAAACCCTCCGCCACCACCGCGATGGCGTCACTGCCCTGGCCCTCAGCCCCAATTCCACTTGCCTCGCCTCTGGATCCGTCGATCACTCCGTCAAACTCTACAAGTATCCCGGTGGAGAGTTTGAGAGAAATATTACAAGGTTTACACTTCCAATACGTTCCCTGGCGTTTAACAAATCAGGGAGCATGCTGGCTGCGGCTGGTGATGATGAGGGTATCAAACTTATAAATACATTTGATGGTACCATTGCGAGGGTTCTCAAAGGACATAAAGGGTCTATCACTGGCTTGGCTTTTGACCCTAATGGCGAATACTTAGCCTCCCTGGATTTAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTTAAAGGCATAGCTCCTGGCACTGGGCTGGATGTTTCAACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGGTTGAAAAATGATGTTGTAATGTATGATAGGGACACTGCCGAGAAGGTGTTTTTTTTGAGAGGTGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGTGAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATTTGGGATGTTAGCAAGAAGCAGGACATTGACAGACAGAAGTTTGATGAGAGAGTCTGTTGCATGGCCTGGAAGCCAACTGGGAATGCATTGGCTGTCATTGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCTCCAACCAAGGATATACCGGTGAAGAACAAAAGCAATGGGGTTGTTTATTTTGATGAGGAGGATCCTGAAAATAGTGCAAGTGGAAACTTGAGTGATATTGGTGGAAATAGTAATGAGGAGTCTGAGCCACCTAGCAGGAAAAGATCGCGTAAACACTCTCTGAGTGAGGAAAATTTAGGTGAGGATGGAGGTGAGGAAATTGTATCATATCTGAAGGTTGATACTCACAAGAAACGAAATCGATCAGGCAAGGAAAATTTGGATAGTGGGAATATGGGATTTAGAAGCACCATGGTAACATCCAAGGCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGAAAAAGGCATTTCTTATGCTACAATATGCTAGGATGTATAACCTCTATTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTTACAATGGCAGCATTGAATGAGAGTGGGAGCGTATTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTTATGTATCGTCCATTTAGTAGCTGGGCCAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTTCTGCTTGGGTTGCAGCAGTAACTAGTTTTAACTATCTTCGCATCTTTTCTGAAGGTGGAATGCAGAGAGACGTGTTTTCACTAGATGGGCCAGTGGTTACAGCATCCGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTACTGATGGCCTTCCCTCAAATGATCAGATGTTAGAGTTTATGGCATTTAATATTCCTCGTGGGACCCAACTTCTTCAAGGTCGCTTGCCACTATCCCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAAGAAGGCCAATTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCAAATTTGGGGGTAGATGGATTCCACTCTTCAGTGCTACTAAAGAGAAGTCAGATGAAAACTATTGGGTGACGGGGTTGAATGCAAGCAAGGTATTTTGCGTGGTATGCAAAAAACCTGAAGGCTTCCCTCAGGTGATGCCTAAGCCAGTTCTCACTCCATTGAGTCTTTCGTTTCCTCTTGCTTCCTCTGATTTGGGGGGATCTGAATCCCATGAAAAGGAGTTTATGATGAATAGCTTGCATCTCTATGAGATTCAGAGAACAATGGACGAAATGGATTCTGTTGGTCTGGACACTACTTCACTTGATGATGATGCTTTCAATTTGGAAGCTGCACAAGATAAATGCATTCTGAGGCTTATAGCAGCTTGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTAGTGAAGCTTTTGACTCTGGAAAAATCAATGAGAGGTGCAATAAAACTTGTTACTGCTATGAAGCTTCCAAACCTGGCCGAAAGGTTCAGCTGCATATTAGAGGAAAGGCTACTTGAAGAAGCCAAAAAAGCTATGGAAACCAACATCAAAGAAAATAGTGTTGCACCCGTTACTGCTGATGCTATTCCTGGCAGAAGCAAGGCCCCAACTCACACTGAAACATTAAATGCTGTTACCATGTCATCATCTCCAAAATTATCTGCTACATCATTCGTAAGGAAAGGCATAACACTAGAGGGAGCTAAAGCTGGCACTAGTAAAGCACCAATGGTAAATGAAACTCTGAAGGTAAAGCAGACAGGGGATGAATCAAGTGAAAAGGTGGGGAAGGTGGGAGATAAACGTCAAGTGCAACAAACTTCCCATCCATATGATCCCTCTACGAAGTCCTCAAATAAGAGTGGACTTAACAAGTCAGAGACTAGTTTGGGACAATCAAATCGTTCTTCCAATCCACTTTTGAAGTCAGAGACTAGTTTGGGACAATCAAATCGTTCTTCCAATCCACTTTTGAAGTCAGAGACTAGTTTGGGACAATCAAATCGTCCATCCAATCCATTTTTGAAGGCTACTATCAAGTGA
>Glyma04g31220.1 sequence type=predicted peptide gene model=Glyma04g31220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVRSMKLKEAHAAKGGPASFCSVLWDQKAKHLVTASSSDVAVCIHDPLFPSFAPKTLRHHRDGVTALALSPNSTCLASGSVDHSVKLYKYPGGEFERNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTFDGTIARVLKGHKGSITGLAFDPNGEYLASLDLTGTVILWELQSGKIIHNLKGIAPGTGLDVSTMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKVFFLRGDHIQPICFLCWSPNGEYIATSGLDRQVLIWDVSKKQDIDRQKFDERVCCMAWKPTGNALAVIDVMGKYGIWDNVIPSSMKSPTKDIPVKNKSNGVVYFDEEDPENSASGNLSDIGGNSNEESEPPSRKRSRKHSLSEENLGEDGGEEIVSYLKVDTHKKRNRSGKENLDSGNMGFRSTMVTSKAKMQEAFQPGSTPVQPGKRHFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALNESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGSAWVAAVTSFNYLRIFSEGGMQRDVFSLDGPVVTASGFKDKLAVVTHATDGLPSNDQMLEFMAFNIPRGTQLLQGRLPLSPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSKFGGRWIPLFSATKEKSDENYWVTGLNASKVFCVVCKKPEGFPQVMPKPVLTPLSLSFPLASSDLGGSESHEKEFMMNSLHLYEIQRTMDEMDSVGLDTTSLDDDAFNLEAAQDKCILRLIAACCNSDKLVRATELVKLLTLEKSMRGAIKLVTAMKLPNLAERFSCILEERLLEEAKKAMETNIKENSVAPVTADAIPGRSKAPTHTETLNAVTMSSSPKLSATSFVRKGITLEGAKAGTSKAPMVNETLKVKQTGDESSEKVGKVGDKRQVQQTSHPYDPSTKSSNKSGLNKSETSLGQSNRSSNPLLKSETSLGQSNRSSNPLLKSETSLGQSNRPSNPFLKATIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
