Glyma04g29250 - SoyBase

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Report for Sequence Feature Glyma04g29250

Feature Type:	gene_model
Chromosome:	Gm04
Start:	33369232
stop:	33371517
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g29250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57040	AT	Annotation by Michelle Graham. TAIR10: response regulator 9 \| chr3:21110059-21111228 FORWARD LENGTH=234	SoyBase	E_val: 2.00E-73	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PTHR26402:SF52	Panther	TWO-COMPONENT RESPONSE REGULATOR	JGI		ISS
PTHR26402:SF53	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
UniRef100_I1JWJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWJ3_SOYBN	SoyBase	E_val: 8.00E-122	ISS
UniRef100_Q1RU46	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Response regulator receiver n=1 Tax=Medicago truncatula RepID=Q1RU46_MEDTR	SoyBase	E_val: 3.00E-84	ISS

Proteins Associated with Glyma04g29250

Locus	Gene Symbol	Protein Name
	RR12	Root Preferential, Response Regulator Type-A

Expression Patterns of Glyma04g29250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g29250 not represented in the dataset	Glyma04g29250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g29250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g137600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g29250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g29250

Limit To All Plant Sequences

>Glyma04g29250.2   sequence type=transcript   gene model=Glyma04g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAATTCAGAGTGTGTTCTCAAAGGCTCAGTTTCATGTTCTGGCTGTTGATGACAGCCTTATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGTTACTGCTTTGGACTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGCAGAGAAATAAAGAGCCTCCCTCTATTGCTCTAGAATCCCATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGCTATGATCTGCTGAAAAAGATCAAGGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTAAACAAGCTGAGGCCACATTTGTTGAAATCAAAAGTTAAGGATGAAGAAGTCCAACAAATCAACAAAAAAAAGGAAGGAAACAGAAGAAAGCCATTCACCAGATAAAACTAGGACAAAAATGGAGCATCAAAGAGTGGTTAATCTCAGTTAAAAATAAATGATACATCATATAGATGTGTTCCCAAGAAAACTTACATCTCCTCTGACTCGCCAACTAACTAGTGAGAAGAGTAGATGGCATCTCAATCATACTGAAAGAAATGTGTAGTATAGGCCACTGACAGAAGAGAGAATTTCATTTCAAATTCAATTTTGTCTGACAAATATAAATTGTTCAGCTCTTTCTCTTAGGTGATTAATGCACAAGATTTTTTTTCTA

Coding sequences of Glyma04g29250

Limit To All Plant Sequences

>Glyma04g29250.1   sequence type=CDS   gene model=Glyma04g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATGGCTGCAGAGGCTCAGTTTCATGTTCTGGCTGTTGATGACAGCCTTATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGTTACTGCTTTGGACTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGCAGAGAAATAAAGAGCCTCCCTCTATTGCTCTAGAATCCCATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGCTATGATCTGCTGAAAAAGATCAAGGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTAAACAAGCTGAGGCCACATTTGTTGAAATCAAAAGTTAAGGATGAAGAAGTCCAACAAATCAACAAAAAAAAGGAAGGAAACAGAAGAAAGCCATTCACCAGATAA

>Glyma04g29250.2   sequence type=CDS   gene model=Glyma04g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATTGAGAGGCTCCTCAAAACCTCTTCCTTTCATGTTACTGCTTTGGACTCTGGTAGTAAGGCTTTGAAGTTTCTTGGTTTGGTTGAAGATGAGCAGAGAAATAAAGAGCCTCCCTCTATTGCTCTAGAATCCCATCAGGATGTAGAAGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGCTATGATCTGCTGAAAAAGATCAAGGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTAAACAAGCTGAGGCCACATTTGTTGAAATCAAAAGTTAAGGATGAAGAAGTCCAACAAATCAACAAAAAAAAGGAAGGAAACAGAAGAAAGCCATTCACCAGATAA

Predicted protein sequences of Glyma04g29250

Limit To All Plant Sequences

>Glyma04g29250.1   sequence type=predicted peptide   gene model=Glyma04g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGMAAEAQFHVLAVDDSLIDRMLIERLLKTSSFHVTALDSGSKALKFLGLVEDEQRNKEPPSIALESHQDVEVNLIITDYCMPEMTGYDLLKKIKESKSLKDIPVVIMSSENVPARINRCLEDGADEFFLKPVQQSDVNKLRPHLLKSKVKDEEVQQINKKKEGNRRKPFTR*

>Glyma04g29250.2   sequence type=predicted peptide   gene model=Glyma04g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIERLLKTSSFHVTALDSGSKALKFLGLVEDEQRNKEPPSIALESHQDVEVNLIITDYCMPEMTGYDLLKKIKESKSLKDIPVVIMSSENVPARINRCLEDGADEFFLKPVQQSDVNKLRPHLLKSKVKDEEVQQINKKKEGNRRKPFTR*

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