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Report for Sequence Feature Glyma04g28560

Feature Type:gene_model
Chromosome:Gm04
Start:32802903
stop:32805998
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g28560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41430AT Annotation by Michelle Graham. TAIR10: dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163 SoyBaseE_val: 9.00E-28ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009646GO-bp Annotation by Michelle Graham. GO Biological Process: response to absence of light SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF07145PFAM Ataxin-2 C-terminal region JGI ISS
UniRef100_B7FH52UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylate-binding protein-interacting protein n=1 Tax=Medicago truncatula RepID=B7FH52_MEDTR SoyBaseE_val: 4.00E-68ISS
UniRef100_I1JWI5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWI5_SOYBN SoyBaseE_val: 7.00E-118ISS

Proteins Associated with Glyma04g28560
LocusGene SymbolProtein Name
ERD15A Responsive to Desication 15 gene A

Expression Patterns of Glyma04g28560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g28560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g138600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g28560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g28560
>Glyma04g28560.2   sequence type=transcript   gene model=Glyma04g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAAATTAAAATTTTCTAATACATGACATCATGTAAATTGATATTTTGTTTTCTTGTATTGTGTAGATTGACTTCAAGTTAGTATAACTGGCTGTCAAGTTGTAATGGCATTGGTCTCTGGAAGAAGTTCTGCACTGAACCCAAATGCACCTCTATTCATACCTGCTGCTCTTCGGCAGGTGGAGGATTTTTCACCTCAATGGTGGGATCTTGTGAAATCTTCAACATGGTTTCGTGATTATTGGTTGAGCCAACATAAGGAGGAAGAATTTGAAGTTGCCAATGACTCTAGTAATGATGATATTGAGAATATGCTCTCAGAAACTTTTGATCTAGGCATGGAAGAAGACTTCAATGTTCTAGAGAACGAGTTTGAGCAGTTGGTGATGTCCTCTGAAGCTCTAGATCATTCTGATCCTAATGCTGGAAAAGTGTCTCCTCAGGGTCTTAACAAAGATGTTAAAGCTATTCTTATTAACTTGACACCAAAATCACCAAGGGAAAGGGGTCCCAAGTCCCTGTCTGGGCTTGCAAAGCACCTCGAGAAGCCAGCACAGCATGTGAATGCGAAGTGTGTCTCTCTCCGAATTCACCAACCTCGTTGAGGAAAACATTTGAAGCTCATAGTGATAGCTTGCTAGAGCTGCAAGTTGCTGACTAGAGCATGAGATCTGTTGAAAGAATTTTTGTATATAGAGGGTGCAATGTTCTTGTATTTTTCTTGTTTATGGTCTTGTATATTTTGATGGAGCCCTCGGAACTGTAGGTAGGTAAGACTTTAATTCTGACCAGCCAAAATTCGGGTATGTCTATGGTTGATGAACTTAAATCTCATTTTTAAATAAATGTTACATGGCATGGAAGTGTGTGGATGTAAGTTTTAGGTGTCTTTAGTTCAATGTGGCAATTGGAGTATACTTTTCAAGCCTTGTGATTTGCATTTAGAGTGATAATGATATTGTAGCTGCTTTTTTCTTGTACAAACACCTATCCATTGTGTGGCCAAGCCAAATTCAGTAACAATTTCCCTACTTTTAAAAATGGAACAATGATATTGTAACACATTTGTGCGCCTCATGCCATGCCAATTTGTGTCAGATATGTGGTTTGGATGTGCTTCATGTAATGAAAAGAGTATGCTGCAACTTGTTATGTGAAAATGTGATATAATAAAAAGTATGTGGATAGTTGAGAAACACGTATGGTGCTGGGGGATTATGGAACATTGTGGTTAGTTACTTG
Coding sequences of Glyma04g28560
>Glyma04g28560.1   sequence type=CDS   gene model=Glyma04g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGTCTCTGGAAGAAGTTCTGCACTGAACCCAAATGCACCTCTATTCATACCTGCTGCTCTTCGGCAGGTGGAGGATTTTTCACCTCAATGGTGGGATCTTGTGAAATCTTCAACATGGTTTCGTGATTATTGGTTGAGCCAACATAAGGAGGAAGAATTTGAAGTTGCCAATGACTCTAGTAATGATGATATTGAGAATATGCTCTCAGAAACTTTTGATCTAGGCATGGAAGAAGACTTCAATGTTCTAGAGAACGAGTTTGAGCAGTTGGTGATGTCCTCTGAAGCTCTAGATCATTCTGATCCTAATGCTGGAAAAGTGTCTCCTCAGGGTCTTAACAAAGATGTTAAAGCTATTCTTATTAACTTGACACCAAAATCACCAAGGGAAAGGGGTCCCAAGTCCCTGTCTGGGCTTGCAAAGCACCTCGAGAAGCCAGCACAGCATGTGAATGCGAAGTGTGTCTCTCTCCGAATTCACCAACCTCGTTGA

>Glyma04g28560.2   sequence type=CDS   gene model=Glyma04g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGGTCTCTGGAAGAAGTTCTGCACTGAACCCAAATGCACCTCTATTCATACCTGCTGCTCTTCGGCAGGTGGAGGATTTTTCACCTCAATGGTGGGATCTTGTGAAATCTTCAACATGGTTTCGTGATTATTGGTTGAGCCAACATAAGGAGGAAGAATTTGAAGTTGCCAATGACTCTAGTAATGATGATATTGAGAATATGCTCTCAGAAACTTTTGATCTAGGCATGGAAGAAGACTTCAATGTTCTAGAGAACGAGTTTGAGCAGTTGGTGATGTCCTCTGAAGCTCTAGATCATTCTGATCCTAATGCTGGAAAAGTGTCTCCTCAGGGTCTTAACAAAGATGTTAAAGCTATTCTTATTAACTTGACACCAAAATCACCAAGGGAAAGGGGTCCCAAGTCCCTGTCTGGGCTTGCAAAGCACCTCGAGAAGCCAGCACAGCATGTGAATGCGAAGTGTGTCTCTCTCCGAATTCACCAACCTCGTTGA
Predicted protein sequences of Glyma04g28560
>Glyma04g28560.1   sequence type=predicted peptide   gene model=Glyma04g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVSGRSSALNPNAPLFIPAALRQVEDFSPQWWDLVKSSTWFRDYWLSQHKEEEFEVANDSSNDDIENMLSETFDLGMEEDFNVLENEFEQLVMSSEALDHSDPNAGKVSPQGLNKDVKAILINLTPKSPRERGPKSLSGLAKHLEKPAQHVNAKCVSLRIHQPR*

>Glyma04g28560.2   sequence type=predicted peptide   gene model=Glyma04g28560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVSGRSSALNPNAPLFIPAALRQVEDFSPQWWDLVKSSTWFRDYWLSQHKEEEFEVANDSSNDDIENMLSETFDLGMEEDFNVLENEFEQLVMSSEALDHSDPNAGKVSPQGLNKDVKAILINLTPKSPRERGPKSLSGLAKHLEKPAQHVNAKCVSLRIHQPR*






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