Glyma04g28540 - SoyBase

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Report for Sequence Feature Glyma04g28540

Feature Type:	gene_model
Chromosome:	Gm04
Start:	32711316
stop:	32718188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g28540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C7FDI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TNP1 n=1 Tax=Glycine max RepID=C7FDI6_SOYBN	SoyBase	E_val: 5.00E-144	ISS
UniRef100_I1K2I9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K2I9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g28540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g28540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g28540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g28540

Limit To All Plant Sequences

>Glyma04g28540.1   sequence type=CDS   gene model=Glyma04g28540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGTTCAATTTGAGATCTATCAAAGGGCTGGATTCAAGGGATGCTATATAGATTTGGTCAACGTCGATCCTGCTACCGGCAAGGCCGACGGTCCCCACAAGAAGAAATTAAGAACATATTTGGGGATTGTCGCTCGTGATAAGGTCGACGTCACATATGACACCTGGAAGGAAGTCCCTACTACTCAGAAGGATTTGATATGGGAGGATATTCAGGCGGAATTTGAAATCCCTGAAGCTTCTGACGGTAGGACAAAGAAGAAAATGCTTCAGATTGTCGGCGAGCGCTGGAGGCAGTTTAAATTTGACTTGACTAGGAAATGGGCACTTGCAGCCGACAAGGACGGTGTGGACGACATTGTCTGTGAAAAATATGGCATTAGCAAGGAAAAATGGACCCAATTTTGTCAGACCCGCAGAGACCCCTCATGGGAGGATGTGAGGAAAAAGGCACAGGCCTCCCAGAAGCAAAACACTGCCCCTCACGTACTGTCTCGTGGGGGTTATGAATATTTAGATGAAAAGCTCATGGCTGAGAAGACAAAGAGAAGACTGGAAGAAGCTGCCCAGTCTGGAAGCACTGGGAGCATCATTGACCCTCCATCTCCCATCAGACGCCACGATTCTTTGGACGAGCAGGCGTCACAGGGATCGTTCGTCCCCCATGGACGTCAGGATATCCTGACTACTGTCATTGGGCGACCAGAGCACCCTAGTCGTGTTCGTGTTGTTGGAGCCGGTGTCACCATAAAGCAATACTTTGGATCGGCTTCACGAACATCCCGCAAAAAAGTGACTCGAATGATGATGACATCCTTCAGCCAGATGCAGTCTCAGTTTCAGTCTCAGATGCAATCACAGGGACTTGCACTACCTCCAGAGCCAGAGGTTGGTCCCTCAGGTCCTCGTGTCAGCACAAAGGACAGTTGTGTTGCTCCCTCAGGGAACGATTTAGGGACGTGTGACTCAGACAAATGCGGGCTATACATTGAAGAAAATCCTTCCCGCCTGGTTGCCCTAGGAAGACTTTATGAGGGATCCACAACAGTTCACAACATCCCTTTGTTGCATGGCCAAGTCAAGGTTGGTGTTGAGGAGGTTAAAGATGTAGAGGCTCTCGTTCCTGTACCCACTGTCGAGGTTACCTTAGTGGGGCAGGCACTTAACACCTTCCTTGTTTGGCCAACACATCTTGTGAAGCGTTTATCAGAACAAGCAGCTGTGTCTCCAACAAAACGTCCAGAAAGCCTGGATGAAGAAGTCGATGATCCCCTGTACCTGATGACATTGACCATCCCACAACTATTTTTGAAGCCTCTCCAGGTTATGTGGGATGCTACCATATTCGGGGTGTTTAATCAAAACTTCCCGTTGTATATAAAGCACGAAGATCTCTCTAAAATTGCACACGGTGGTCAATGTCTCAGCATATCTGTTATACAGTTGTGGATTCTCCATCTGATTGAGACAAGTGTGCGAGCGGGGAATTCTAATGTGTATGGATTCCTCGAGCCACAGTCCATTCAGAGATCTGGGCAATCACAATTTGAATCCAAAAGTTACATCAATAGTTGGATACAGAGTTCAAAACGAGATGTTTACCTTGGAGCCTACCTGAATGGTGGACACTGGCAAATGGTCGTCATTCTACCTAAGGAAAACCTAGTTGTCTGGTTTTGTTCATTACATAACAGGCCAGACAACTACCTTAAGAGAATAATTAACAGTGCTTTGAAAGGACTTGATGATACTCCACAACCTAAATCCAAGGTTGTTGCTAGGTGGATTGTTGTTAAGGATGGTACAATTCGCTCTGAGGTGCATGGTATTTCTATGATCATTGATCAATCTCTGTTCTTTTTATTAACTAAATTACCCAGTCAAGGTGCACCTTTTGAGGGCACCATTGTTGATGACTGGAAGTTTGACTATTCTAGTCATGATGCTCGCCGTATGGTATGTAATGACCAAGCTGATATGACCGGTAGATTGCTAGCCGAATCATTAACCTTTGATTGTTGCATCATGCACTATATCATAGTTAGAATTTTGCTTCTCTGTTCTTCTAATCTGGCTCAAGTCTCTAAGGAGGACTTGATTTTGATGTGGGCTTTCCTTACCGGTCGTCAGAACGACTGGGCTCACTTTCTTAGGTATCGAATGAATAAGGCATTAGGGGCCAATGCACCTCTTCCGTATCCTCAATTGGTCACCCTTTTTCTCAGTCATTTTCAAATTCCTCTTGATGATGAACCTTTTGTTCAAGTCAAGCGATCTTTTGCCATTGGTGCTGGTGCAGTAACTTCATTTGGTTACCGTAAGGATCGTGACGGACAGTGGCTAAAAAAGGACACTCAACCTCCATAA

Predicted protein sequences of Glyma04g28540

Limit To All Plant Sequences

>Glyma04g28540.1   sequence type=predicted peptide   gene model=Glyma04g28540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVQFEIYQRAGFKGCYIDLVNVDPATGKADGPHKKKLRTYLGIVARDKVDVTYDTWKEVPTTQKDLIWEDIQAEFEIPEASDGRTKKKMLQIVGERWRQFKFDLTRKWALAADKDGVDDIVCEKYGISKEKWTQFCQTRRDPSWEDVRKKAQASQKQNTAPHVLSRGGYEYLDEKLMAEKTKRRLEEAAQSGSTGSIIDPPSPIRRHDSLDEQASQGSFVPHGRQDILTTVIGRPEHPSRVRVVGAGVTIKQYFGSASRTSRKKVTRMMMTSFSQMQSQFQSQMQSQGLALPPEPEVGPSGPRVSTKDSCVAPSGNDLGTCDSDKCGLYIEENPSRLVALGRLYEGSTTVHNIPLLHGQVKVGVEEVKDVEALVPVPTVEVTLVGQALNTFLVWPTHLVKRLSEQAAVSPTKRPESLDEEVDDPLYLMTLTIPQLFLKPLQVMWDATIFGVFNQNFPLYIKHEDLSKIAHGGQCLSISVIQLWILHLIETSVRAGNSNVYGFLEPQSIQRSGQSQFESKSYINSWIQSSKRDVYLGAYLNGGHWQMVVILPKENLVVWFCSLHNRPDNYLKRIINSALKGLDDTPQPKSKVVARWIVVKDGTIRSEVHGISMIIDQSLFFLLTKLPSQGAPFEGTIVDDWKFDYSSHDARRMVCNDQADMTGRLLAESLTFDCCIMHYIIVRILLLCSSNLAQVSKEDLILMWAFLTGRQNDWAHFLRYRMNKALGANAPLPYPQLVTLFLSHFQIPLDDEPFVQVKRSFAIGAGAVTSFGYRKDRDGQWLKKDTQPP*

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