Glyma04g28490 - SoyBase

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Report for Sequence Feature Glyma04g28490

Feature Type:	gene_model
Chromosome:	Gm04
Start:	32677405
stop:	32678736
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g28490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G50420	AT	Annotation by Michelle Graham. TAIR10: scarecrow-like 3 \| chr1:18678177-18679625 REVERSE LENGTH=482	SoyBase	E_val: 5.00E-149	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_G7J1L1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Medicago truncatula RepID=G7J1L1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A1FD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A1FD related cluster n=1 Tax=unknown RepID=UPI000233A1FD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g28490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g28490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g138900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g28490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g28490

Limit To All Plant Sequences

>Glyma04g28490.1   sequence type=CDS   gene model=Glyma04g28490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGATTAGGTTCGCCATCCCAGTGGCTGAGGGAGCTGAGATGGGACTCCCAGGGCTTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCTGGAAGCATCAAGAATGCAGATATTGGCCTTGAGTACATATATCAGATTTCATCTCCTGATGGTAATGCAGTGCAAAGGATGGTCACTTATTTCAGTGAAGCACTTGGTTACAGGATAATAAAAAATTTGCCTGGTGTATATAAGTCTCTCAATCCATCAAAAACATCATTATCTTCTGAAGATATCCTTGTTCAGAAATACTTCTATGAACTGTGTCCATTTTTGAAGTTCTCATACCTGATCACAAACCATGCCATTGCTGAGGCCATGGAGTGCGAAAAGGTGGTTCACATTATTGATCTTCACTGTTGTGAGCCAACTCAATGGATAGATCTTCTACTAACTTTCAAAAACCGTCAGGGAGGTCCACCCCATCTGAAAATTACAGGAATTCACGAGAAGAAAGAAGTATTAGACCAAATGAACTTTCATTTGACAACTGAAGCTGGGAAATTGGATTTTCCTTTGCAGTTCTATCCAGTTGTTAGCAAACTGGAAGATGTTGACTTTGAGAAGTTGCCTGTAAAGATAGGAGATGCTCTTGCAATCACTTCTGTTCTTCAGCTGCATTCTCTTCTTGCCACTGATGATGATATGGCAGGGAGGATCTCACCGGCTGCGGCAGCATCTATGAATGTGCAGAGAGCACTGCATATGGGTCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATACCTTGAGTCCTGATTCTGCTTTGTCACCGCTTTCCTTGGGTGCCTCACCTAAGATGGGGATCTTTCTCAATGCTATTAGAAAACTTCAACCAAAACTAGTAGTGATTACTGAACAAGAATCAAATCTGAATGGTTCCAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCTTGGACTCTACTGTTATGAAAACATCAGTAGAGAGGCAAAAACTTGAGAGCAAGCTTCTTGGAGAGCAGATAAAGAACATCATTGCTTGTGAGGGTGTTGATAGAAAGGAGAGACATGAGAAACTCGAGAAATGGATTCGAAGACTTGAAATGGCTGGTTTTGAAAAGGTACCTTTGAGCTACAATGGGAGGTTAGAAGCAAAGAATCTGTTGCAGAGATATAGTAATAAATACAAATTTCGAGAAGAGAATGATTGTTTACTTGTCTGCTGGAGTGACAGACCATTGTTTTCTGTATCAGCTTGGAGTTTTAGGAGATGA

Predicted protein sequences of Glyma04g28490

Limit To All Plant Sequences

>Glyma04g28490.1   sequence type=predicted peptide   gene model=Glyma04g28490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGLGSPSQWLRELRWDSQGLNPISLLIDCAKCVASGSIKNADIGLEYIYQISSPDGNAVQRMVTYFSEALGYRIIKNLPGVYKSLNPSKTSLSSEDILVQKYFYELCPFLKFSYLITNHAIAEAMECEKVVHIIDLHCCEPTQWIDLLLTFKNRQGGPPHLKITGIHEKKEVLDQMNFHLTTEAGKLDFPLQFYPVVSKLEDVDFEKLPVKIGDALAITSVLQLHSLLATDDDMAGRISPAAAASMNVQRALHMGQRTFAEWLERDMINAYTLSPDSALSPLSLGASPKMGIFLNAIRKLQPKLVVITEQESNLNGSNLMERVDRALYFYSALFDCLDSTVMKTSVERQKLESKLLGEQIKNIIACEGVDRKERHEKLEKWIRRLEMAGFEKVPLSYNGRLEAKNLLQRYSNKYKFREENDCLLVCWSDRPLFSVSAWSFRR*

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