Glyma04g28420 - SoyBase

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Report for Sequence Feature Glyma04g28420

Feature Type:	gene_model
Chromosome:	Gm04
Start:	32424326
stop:	32428722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g28420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27290	AT	Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein \| chr4:13666281-13669202 FORWARD LENGTH=783	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0048544	GO-bp	Annotation by Michelle Graham. GO Biological Process: recognition of pollen	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF703	Panther		JGI		ISS
PF00954	PFAM	S-locus glycoprotein family	JGI		ISS
PF01453	PFAM	D-mannose binding lectin	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08276	PFAM	PAN-like domain	JGI		ISS
PF11883	PFAM	Domain of unknown function (DUF3403)	JGI		ISS
UniRef100_G7IYX6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase n=1 Tax=Medicago truncatula RepID=G7IYX6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JWI1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWI1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g28420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g28420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g139100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g28420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g28420

Limit To All Plant Sequences

>Glyma04g28420.1   sequence type=CDS   gene model=Glyma04g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATAATGCTGGTAACCAGGGCAAACACAATGGAGAGCCAAAAAGTGCTTATGCTCATGATGTACACTACTCTCTTTTGCTTCATGGCCACTTTCTCTAGTCAAGACACAGTTACTATTACTCTAAATCAGTCTCTCCAATTTAGTGACACCCTCGTTTCTTTAGACGGAACCTTCGAAGCAGGATTTTTCAACTTTGAAAATTCAAGACATCAATATTTTGGTATATGGTACAAGAGAATATCAGCTAGGACTGTTGTGTGGGTTGCCAACAGAGATGTCCCAGTACAGAACTCAACAGCAGTTTTGAAACTTACTGATCAGGGAAATATCGTTATTCTTGATGGCTCCAGAGGCAGAGTCTGGTCCTCTAACTCATCAAGAATTGCAGTGAAACCAGTTATGCAGCTTTTGAAAACTGGAAACCTTGTTGTGAAAGATGGAGAGGGCACTAAGAACATCTTGTGGCAAAGCTTTGATTATCCTGGCAACACATTCCTCCCTGGAATGAAACTGAAAAGCAATTTAGTTACTGGTCCATATAACTATCTTACATCTTGGAGAGACACTGAAGATCCAGCTCAAGGAGAGTTTTCGTATCGCATTGACATTCGTGGCTTGCCTCAACTGGTTACTGCAAAAGGAGCAACAATTTGGTACAGGGCCGGGTCATGGAATGGCTATCTTTTCACTGGAGTTTCTTGGCAGAGAATGCATAGATTCTTGAATTTCTCTTTTGAGTCCACTGACAAAGAAGTTTCTTATGAATATGAAACATGGAACAGTTCAATACTCACTAGAACTGTGCTCTATCCAACGGGAAGTTCAGAGCGTTCTCTATGGTCAGATGAAAAACAAAGGTGGCTCACTATAGCCACCCGTCCTGTAGACGAGTGTGAATATTATGCAGTTTGTGGTGTTAACTCTAATTGCAACATCAATGATTTTCCAATATGTAAGTGCCTCCAAGGTTTCATACCAAAATTTCAAGCAAAGTGGGATTCGTCAGATTGGTCTGGTGGGTGTGTCAGAAGAATAAAATTAAGTTGTCATGGTGGAGATGGGTTTGTGAAATACTCAGGAATGAAGTTGCCAGACACGTCTTCTTCGTGGTTTAACAAGAGCTTGAGCCTTGAGGAATGTAAAACATTGTGTTTGAGAAACTGCTCTTGTACTGCATATGCAAATTTAGATATCAGAGATGGTGGGAGTGGCTGCTTGCTTTGGTTTGATAACATTGTTGACATGAGAAATCACACAGACCGAGGACAAGAAATTTATATACGACTTGACATTTCTGAACTCTATCAGAGAAGGAATAAGAACATGAACAGAAAGAAGCTTGCAGGGATTCTAGCAGGACTTATTGCATTCGTTATAGGACTAACAATTCTTGTGTGGGCCACTTCCTCATTTATAAAAAGGATGAATCTAGGCAAGCCAGAAATTATAAAAAAGCTAATTCACTGGAAGCACATGAAAGAGACGGAAGAGAATGACATACAAACAATATTTGATTTTTCAACCATTGATATTGCCACAAATCACTTTTCTGACAGAAACAAGTTAGGAGAAGGTGGATTTGGACCGGTATATAAGGGAATATTGGAAGATGGACAAGAGATTGCAGTCAAGAGGCTTTCTAAAACTTCAAGACAAGGAACTGAGGAGTTTAAAAATGAAGTAAAGTTGATGGCAACTCTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTATGAGTTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACAATGCGAGGTAAATTACTAGATTGGACTAGGTGCTTTCAAATTATAGAAGGAATTGCTCGTGGACTTCTGTACCTTCATCAAGATTCTACACTAAGAATCATACATAGAGATCTAAAAACAAGCAATATTCTGCTTGATATCAATATGATTCCAAAGATATCAGATTTTGGTCTAGCTAGAACATTTGGAGGAGATCAAGCTGAGGCAAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCAGAATATGTAGTGCATGGGTCTTTCTCAACCAAATCTGATGTTTTTAGTTATGGTGTCATCGTACTTGAGATAATTAGTGGGAGGAAGAATCGTGGATTTCGTGACCCTCACCATAATCATCTTAACCTTCTAGGCCATGTATGGAGACTATGGACTGAAGAAAGACCCCTGGAGTTAATAGATGAAATGTTAGATGATGATACGACCATATCTTCAGAAATATTACGGCGTATTCATGTGGGTCTACTGTGTGTACAAGAGAATCCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTGATGTTAAATGGTGGAACGTTACTCCCAAAACCAAGACAGCCTGGGTTCTACACTGGAAAAGATAATACAATTGACACAGGATCTTGTTCAAAGCACCATGAAAGGTGTTCAGTAAATGAAATTTCAATCTCGTTGTTAGAGGCACGATAG

Predicted protein sequences of Glyma04g28420

Limit To All Plant Sequences

>Glyma04g28420.1   sequence type=predicted peptide   gene model=Glyma04g28420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIMLVTRANTMESQKVLMLMMYTTLFCFMATFSSQDTVTITLNQSLQFSDTLVSLDGTFEAGFFNFENSRHQYFGIWYKRISARTVVWVANRDVPVQNSTAVLKLTDQGNIVILDGSRGRVWSSNSSRIAVKPVMQLLKTGNLVVKDGEGTKNILWQSFDYPGNTFLPGMKLKSNLVTGPYNYLTSWRDTEDPAQGEFSYRIDIRGLPQLVTAKGATIWYRAGSWNGYLFTGVSWQRMHRFLNFSFESTDKEVSYEYETWNSSILTRTVLYPTGSSERSLWSDEKQRWLTIATRPVDECEYYAVCGVNSNCNINDFPICKCLQGFIPKFQAKWDSSDWSGGCVRRIKLSCHGGDGFVKYSGMKLPDTSSSWFNKSLSLEECKTLCLRNCSCTAYANLDIRDGGSGCLLWFDNIVDMRNHTDRGQEIYIRLDISELYQRRNKNMNRKKLAGILAGLIAFVIGLTILVWATSSFIKRMNLGKPEIIKKLIHWKHMKETEENDIQTIFDFSTIDIATNHFSDRNKLGEGGFGPVYKGILEDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTMRGKLLDWTRCFQIIEGIARGLLYLHQDSTLRIIHRDLKTSNILLDINMIPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYVVHGSFSTKSDVFSYGVIVLEIISGRKNRGFRDPHHNHLNLLGHVWRLWTEERPLELIDEMLDDDTTISSEILRRIHVGLLCVQENPENRPNMSSVVLMLNGGTLLPKPRQPGFYTGKDNTIDTGSCSKHHERCSVNEISISLLEAR*

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