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Report for Sequence Feature Glyma04g27740

Feature Type:gene_model
Chromosome:Gm04
Start:31879386
stop:31880446
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g27740
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65870AT Annotation by Michelle Graham. TAIR10: Disease resistance-responsive (dirigent-like protein) family protein | chr1:24503624-24504193 FORWARD LENGTH=189 SoyBaseE_val: 1.00E-44ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009807GO-bp Annotation by Michelle Graham. GO Biological Process: lignan biosynthetic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR21495Panther NUCLEOPORIN-RELATED JGI ISS
PTHR21495:SF11Panther SUBFAMILY NOT NAMED JGI ISS
PF03018PFAM Dirigent-like protein JGI ISS
UniRef100_B9SYV5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance response protein, putative n=1 Tax=Ricinus communis RepID=B9SYV5_RICCO SoyBaseE_val: 2.00E-49ISS
UniRef100_I1JWH7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWH7_SOYBN SoyBaseE_val: 1.00E-134ISS

Expression Patterns of Glyma04g27740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g27740 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g139800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g27740
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g27740
>Glyma04g27740.1   sequence type=CDS   gene model=Glyma04g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTTGTGTGTCTCCTTTTTTCCTTGCATTTCATGGTTATCATGTCAGGTTCCTTACCAGCAAATAGTGAAGTGTTTGCAAAAGAGTCTCCTATGTCTCTATCCACAAAACCCGTGGAAAGACTCACCCAACTCCACTTTTATTTCCATAACAACAAAATGGGGGAACACCCGACTGCTATGAAAATTGTTGAGCCTCCTAAGGTGTCCATTTCTGGTTTTGGGACTATTTACATGATGGATGACCCTCTAACCGAAGGACCAAGTCCAACTTCAAAGCTTGTTGGAAGATGTCAGGGAATATATGCTGAGGCTTCGCAACATGAACCTGCGATACTCATGGTAACGAATTTGTTCTTCACTGAGGGCATTTACAATGGCAGCACCCTCAGCATTCTTGGGAGGAACCCTATGTTGCAGAGTGTTAAAGAAATGCCAATTGTTGGGGGTAGTGGGATCTTCAAATATGCAAGGGGTTCTTCTGTGCTTAAGACACATGTGCATGATGCTAAGGCTGGTGTTGCAATTGTCGAATACAACGTGTCTGTCCTGCATGTTTGA
Predicted protein sequences of Glyma04g27740
>Glyma04g27740.1   sequence type=predicted peptide   gene model=Glyma04g27740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLVCLLFSLHFMVIMSGSLPANSEVFAKESPMSLSTKPVERLTQLHFYFHNNKMGEHPTAMKIVEPPKVSISGFGTIYMMDDPLTEGPSPTSKLVGRCQGIYAEASQHEPAILMVTNLFFTEGIYNGSTLSILGRNPMLQSVKEMPIVGGSGIFKYARGSSVLKTHVHDAKAGVAIVEYNVSVLHV*






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