SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63780 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal RNA processing Brix domain protein | chr1:23665045-23667243 REVERSE LENGTH=294 | SoyBase | E_val: 7.00E-174 | ISS |
| GO:0000478 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing | SoyBase | N/A | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005732 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex | SoyBase | N/A | ISS |
| GO:0015030 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Cajal body | SoyBase | N/A | ISS |
| GO:0016363 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear matrix | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2781 | KOG | U3 small nucleolar ribonucleoprotein (snoRNP) component | JGI | ISS | |
| PTHR22734 | Panther | U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 | JGI | ISS | |
| PF04427 | PFAM | Brix domain | JGI | ISS | |
| UniRef100_G7IW56 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U3 small nucleolar ribonucleoprotein IMP4 n=2 Tax=Medicago truncatula RepID=G7IW56_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JWH5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWH5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma04g27730 not represented in the dataset |
Glyma04g27730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g139900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g27730.2 sequence type=transcript gene model=Glyma04g27730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTAGAGGGACTAAAACACAGGGGTTTTGCTCCAAGCTTACTTTCCTGTCTTCTCTTTTCTTTGCATCCTTGCTAATTTCATCTTCCCGCCGAGCTCCACACTCTTTTGACTTCGTTGTTCTTCCCTTATCTGTATTCAACAGAGTACGTCGAAAGGTTTCTTTTTGAAAATGCTGCGTAGAAACATCCGTTTGAGGAGAGAGTATTTGTACCGAAAGAGCTTAGAAGGCAAAGAACGTTTGCTCTACGAAAAGAAGCGCAAAATCAGAGAAGCTCTTCAAGAAGGGAAGCCCATACCCACTGAACTCAGAAACGAGGAAGCTGCTCTTCGCCGCGCAATCGACCTCGAAGATGAAAACACCGCTGTTCCGAGAACGCACATTGACGATGAGTATGCTTATGCTGCGGAAAAGGATCCTAAAATCTTGCTGACTACTTCCAGGGATCCGAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGCACAGAGAATGAATCGGGGTGGTCAGGTTATCTCAGAGATCATAGAATCTTGTCGTGCACATGACTATACAGATGTTGTTTTGGTCCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTTGGATTACTCAACGTGGTTACAAGGCATGAAATTAAAGACAAGAAAGCCATTGGAACAATGCCTGAGGCTTATCCACATCTGATTCTCAATAATTTCTCAACTAAGTTAGGTGACAGAACCGCAAACATTATGAAGCATCTTTTTCCAGTGCCAAAACTAGACACAAAACGTATTGTCATGTTTGCCAACCAGTCTGACTATATCTCATTCAGAATGGGAGCCCTAAATCTATAGAACTGAAGGAAATTGGTCCACGGTTTGAGTTACGGCTTTATCAGATAAAGTTGGGAACGGTGGATCAAGCTGAAGCTCAAATAGAATGGATCATCAGACCTTACATGAACACCACTAAAAAGCGGAAGTTCCTCAGTAATTGATGCAAGCATAGTGTTTGCGCAGCTAAACCATATGATCATACATTTTGAGGTGGCATTTCTCTGACTGTACTTCAAGGATGTGTTAAAGTTGATTAGGTTGATAAACAAGCTAAAATTTTTTGAATGAAAATTATGTTTTAGAATTTAATTTTATACTTGTGTGTTCTTATATCGTTACTGAGCTTGAAATTTCATTTTGGTAGTTGAATTCATTATATATTGACATATATCAACCCACCAAAGACAAAAAAGAAGACCTTCGTTATATTAAAGGACCAAGAATTTAAGATTCGCTCCCAGAAAAGCCCATTTTCGCAGTTGTTTTTACTTCAAACAAGATTATGTGCCCATCATTTTGAATCTCTGGCAATTTCGTACGTAAGAAAAATCT
>Glyma04g27730.1 sequence type=CDS gene model=Glyma04g27730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCGTAGAAACATCCGTTTGAGGAGAGAGTATTTGTACCGAAAGAGCTTAGAAGGCAAAGAACGTTTGCTCTACGAAAAGAAGCGCAAAATCAGAGAAGCTCTTCAAGAAGGGAAGCCCATACCCACTGAACTCAGAAACGAGGAAGCTGCTCTTCGCCGCGCAATCGACCTCGAAGATGAAAACACCGCTGTTCCGAGAACGCACATTGACGATGAGTATGCTTATGCTGCGGAAAAGGATCCTAAAATCTTGCTGACTACTTCCAGGGATCCGAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGCACAGAGAATGAATCGGGGTGGTCAGGTTATCTCAGAGATCATAGAATCTTGTCGTGCACATGACTATACAGATGTTGTTTTGGTCCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTTGGATTACTCAACGTGGTTACAAGGCATGAAATTAAAGACAAGAAAGCCATTGGAACAATGCCTGAGGCTTATCCACATCTGATTCTCAATAATTTCTCAACTAAGTTAGGTGACAGAACCGCAAACATTATGAAGCATCTTTTTCCAGTGCCAAAACTAGACACAAAACGTATTGTCATGTTTGCCAACCAGTCTGACTATATCTCATTCAGGCATCATATTTATGAAAAGAATGGGAGCCCTAAATCTATAGAACTGAAGGAAATTGGTCCACGGTTTGAGTTACGGCTTTATCAGATAAAGTTGGGAACGGTGGATCAAGCTGAAGCTCAAATAGAATGGATCATCAGACCTTACATGAACACCACTAAAAAGCGGAAGTTCCTCAGTAATTGA >Glyma04g27730.2 sequence type=CDS gene model=Glyma04g27730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCGTAGAAACATCCGTTTGAGGAGAGAGTATTTGTACCGAAAGAGCTTAGAAGGCAAAGAACGTTTGCTCTACGAAAAGAAGCGCAAAATCAGAGAAGCTCTTCAAGAAGGGAAGCCCATACCCACTGAACTCAGAAACGAGGAAGCTGCTCTTCGCCGCGCAATCGACCTCGAAGATGAAAACACCGCTGTTCCGAGAACGCACATTGACGATGAGTATGCTTATGCTGCGGAAAAGGATCCTAAAATCTTGCTGACTACTTCCAGGGATCCGAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGCACAGAGAATGAATCGGGGTGGTCAGGTTATCTCAGAGATCATAGAATCTTGTCGTGCACATGACTATACAGATGTTGTTTTGGTCCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTTGGATTACTCAACGTGGTTACAAGGCATGAAATTAAAGACAAGAAAGCCATTGGAACAATGCCTGAGGCTTATCCACATCTGATTCTCAATAATTTCTCAACTAAGTTAGGTGACAGAACCGCAAACATTATGAAGCATCTTTTTCCAGTGCCAAAACTAGACACAAAACGTATTGTCATGTTTGCCAACCAGTCTGACTATATCTCATTCAGAATGGGAGCCCTAAATCTATAG
>Glyma04g27730.1 sequence type=predicted peptide gene model=Glyma04g27730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRRAIDLEDENTAVPRTHIDDEYAYAAEKDPKILLTTSRDPSAPLQQFVKELSFVFPNAQRMNRGGQVISEIIESCRAHDYTDVVLVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDKKAIGTMPEAYPHLILNNFSTKLGDRTANIMKHLFPVPKLDTKRIVMFANQSDYISFRHHIYEKNGSPKSIELKEIGPRFELRLYQIKLGTVDQAEAQIEWIIRPYMNTTKKRKFLSN* >Glyma04g27730.2 sequence type=predicted peptide gene model=Glyma04g27730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRRAIDLEDENTAVPRTHIDDEYAYAAEKDPKILLTTSRDPSAPLQQFVKELSFVFPNAQRMNRGGQVISEIIESCRAHDYTDVVLVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDKKAIGTMPEAYPHLILNNFSTKLGDRTANIMKHLFPVPKLDTKRIVMFANQSDYISFRMGALNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
