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Report for Sequence Feature Glyma04g27460

Feature Type:gene_model
Chromosome:Gm04
Start:31432186
stop:31433008
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g27460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71790AT Annotation by Michelle Graham. TAIR10: Subunits of heterodimeric actin filament capping protein Capz superfamily | chr1:26996869-26998785 FORWARD LENGTH=256 SoyBaseE_val: 5.00E-50ISS
GO:0007015GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament organization SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0030036GO-bp Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization SoyBaseN/AISS
GO:0051693GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament capping SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0008290GO-cc Annotation by Michelle Graham. GO Cellular Compartment: F-actin capping protein complex SoyBaseN/AISS
GO:0003779GO-mf Annotation by Michelle Graham. GO Molecular Function: actin binding SoyBaseN/AISS
PTHR10619Panther F-ACTIN CAPPING PROTEIN BETA SUBUNIT JGI ISS
PF01115PFAM F-actin capping protein, beta subunit JGI ISS
UniRef100_B9SM91UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-actin capping protein beta subunit, putative n=1 Tax=Ricinus communis RepID=B9SM91_RICCO SoyBaseE_val: 7.00E-52ISS
UniRef100_I1JLW9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JLW9_SOYBN SoyBaseE_val: 9.00E-71ISS

Expression Patterns of Glyma04g27460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g27460 not represented in the dataset
Glyma04g27460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g27460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g140500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g27460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g27460
>Glyma04g27460.1   sequence type=CDS   gene model=Glyma04g27460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTAAAGATGGCTCAAAGACAGGGCAGGGTCGACGGGGATACTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGGTGGGACCAGAGGAAGAAGAAAACACCAATTATCAGTTAACCAGTACAGTTATGCTGACTCTGACTACAAATAATGTGTCATCAGGAACTTTCAATTTATCTGGATCAATTAGACGTCAGATGAATATGAAGCTATCAGTTGCTGATGGTCATCTTTGTAACATGGGAAGGATGATTGAGGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAGGTACTTCTTGATTATACAGGATTCAACTGCGTGCTTGTTGTATTTGAGATCAGCTTCTTTACTTTTTGTTCTTTGATGGGGAAGGGTTTGGGTATTTATCAAATTTGA
Predicted protein sequences of Glyma04g27460
>Glyma04g27460.1   sequence type=predicted peptide   gene model=Glyma04g27460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKDGSKTGQGRRGYLEEGAWDAIHVIEVGPEEEENTNYQLTSTVMLTLTTNNVSSGTFNLSGSIRRQMNMKLSVADGHLCNMGRMIEEMESKLRNSLDQVLLDYTGFNCVLVVFEISFFTFCSLMGKGLGIYQI*






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