Glyma04g27100 - SoyBase

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Report for Sequence Feature Glyma04g27100

Feature Type:	gene_model
Chromosome:	Gm04
Start:	31031936
stop:	31034648
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g27100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12380	AT	Annotation by Michelle Graham. TAIR10: annexin 8 \| chr5:4009223-4010687 FORWARD LENGTH=316	SoyBase	E_val: 2.00E-123	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium-dependent phospholipid binding	SoyBase	N/A	ISS
KOG0819	KOG	Annexin	JGI		ISS
PTHR10502	Panther	ANNEXIN	JGI		ISS
PTHR10502:SF10	Panther	ANNEXIN VII	JGI		ISS
PF00191	PFAM	Annexin	JGI		ISS
UniRef100_I1JWG5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Annexin n=1 Tax=Glycine max RepID=I1JWG5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JWG5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Annexin n=1 Tax=Glycine max RepID=I1JWG5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g27100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g27100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g140900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g27100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g27100

Limit To All Plant Sequences

>Glyma04g27100.2   sequence type=transcript   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATTTGAAGTTCATGATCAAATTTTCAATCCTTCATTCTCACATAACAGTCAGTTCTTAATGTTGGGGAGCTGATGGAAAAGCCATCATAGCAATACTAGGCCATAGAAATGCCACCCAAAGGACCCTAATCAGAGAAGCATACCAGAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTCTCTGGTGACTTTGAGAGGGCAATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAACCTATTTTCATTTTAAGGATACATGTAATTGGTTTCTGCCAAGTTTGTGACTGAAGCTGTTATCTAAGTTTGTTTCTCTCAATGACTCCCTTAACACCCTGTCCAGCCGTTGTTATCTTTGTCGTATGAGGGAACTTGAAGATATCAATTAATGAAGAAAGTTCCACAATAAGTATTATGGGTTTTTTTTTTTATTTTTTTTTACATTCACATGAATTCAATTTGGATAGCAAAAAATATATAATAATTTCCGCATATTGTTCAACTTACTAGACTTTATAGTATTAATAGTCAGTTCTAATCATGGTTATAAAGTCTTGGCAATCATGTTA

>Glyma04g27100.3   sequence type=transcript   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAAAAAACACATCAATTCAACCATGGCTACGCTGATTGCTCCTTCCAACCACTCTCCTGTGGAAGATGCCGAATCTCTCCGGAAGGCTGTCAAAGGTTGGGGAGCTGATGGAAAAGCCATCATAGCAATACTAGGCCATAGAAATGCCACCCAAAGGACCCTAATCAGAGAAGCATACCAGAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTCTCTGGTGACTTTGAGAGGGCAATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAACCTATTTTCATTTTAAGGATACATGTAATTGGTTTCTGCCAAGTTTGTGACTGAAGCTGTTATCTAAGTTTGTTTCTCTCAATGACTCCCTTAACACCCTGTCCAGCCGTTGTTATCTTTGTCGTATGAGGGAACTTGAAGATATCAATTAATGAAGAAAGTTCCACAATAAGTATTATGGGTTTTTTTTTTTATTTTTTTTTACATTCACATGAATTCAATTTGGATAGCAAAAAATATATAATAATTTCCGCATATTGTTCAACTTACTAGACTTTATAGTATTAATAGTCAGTTCTAATCATGGTTATAAAGTCTTGGCAATCATGTTA

>Glyma04g27100.4   sequence type=transcript   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAACGTGCTTTGGAACGCGATTTGAGTGAAAGAAACACACACTAACCTATTGGGTTTTAACATCATTGTAGGTTGGGGAGCTGATGGAAAAGCCATCATAGCAATACTAGGCCATAGAAATGCCACCCAAAGGACCCTAATCAGAGAAGCATACCAGAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTCTCTGGTGACTTTGAGAGGGCAATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAACCTATTTTCATTTTAAGGATACATGTAATTGGTTTCTGCCAAGTTTGTGACTGAAGCTGTTATCTAAGTTTGTTTCTCTCAATGACTCCCTTAACACCCTGTCCAGCCGTTGTTATCTTTGTCGTATGAGGGAACTTGAAGATATCAATTAATGAAGAAAGTTCCACAATAAGTATTATGGGTTTTTTTTTTTATTTTTTTTTACATTCACATGAATTCAATTTGGATAGCAAAAAATATATAATAATTTCCGCATATTGTTCAACTTACTAGACTTTATAGTATTAATAGTCAGTTCTAATCATGGTTATAAAGTCTTGGCAATCATGTTA

Coding sequences of Glyma04g27100

Limit To All Plant Sequences

>Glyma04g27100.1   sequence type=CDS   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTGGGGAGCTGATGGAAAAGCCATCATAGCAATACTAGGCCATAGAAATGCCACCCAAAGGACCCTAATCAGAGAAGCATACCAGAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTCTCTGGTGACTTTGAGAGGGCAATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAA

>Glyma04g27100.2   sequence type=CDS   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAA

>Glyma04g27100.3   sequence type=CDS   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGCTGATTGCTCCTTCCAACCACTCTCCTGTGGAAGATGCCGAATCTCTCCGGAAGGCTGTCAAAGGTTGGGGAGCTGATGGAAAAGCCATCATAGCAATACTAGGCCATAGAAATGCCACCCAAAGGACCCTAATCAGAGAAGCATACCAGAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTCTCTGGTGACTTTGAGAGGGCAATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAA

>Glyma04g27100.4   sequence type=CDS   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGTTGGCCAATATAGCCATTAAGAGTGCTGACAAAAACTACCAAGTGATTGTGGAAATTTCCTGTGTCCTTTCACCTGAAGAGCTTTTTGCTGTGAGGCGTGCCTACCACAACAAATACAAGCGTTGCTTGGAGGAAGATGTGGCCGCTAATACCAGTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTTAGCTCATTTAGGTATGGGGGCAGTGAAATTAATGCAAAATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATAAAAAACAAGAATAAAAGTAATGACGAAATTATTAGGATCCTTACTACTAGGAGCAAGACCCAACTTGTGGCTACTTTCAATCGCTACAGGGATGATCATGGCATTGCCATCACTAAGAAATTGTCCGATGAAGGATCTGATGAATTTCATAAGGCAGCAAATTTAGCCATTAGTTGCATCAATGATCATAAGAAGTACTACGAAAAGGTTCTTCGCAATGCCATGGAACATCTTGGAACTGCTGAGGATGCCCTCACACGTGTGATTGTCACCAGGGCTGAGAAGGACCTGAAGGAGATCAAAGAGGTGTATTACAAGAGAAACAGTGTTCACCTTGAGCATGCAGTGGCCAAGGAAACTTCTGGAGACTACAAGAAGTTCCTCCTCTCTTTGATGGGGAAAGAAGAGTAA

Predicted protein sequences of Glyma04g27100

Limit To All Plant Sequences

>Glyma04g27100.1   sequence type=predicted peptide   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWGADGKAIIAILGHRNATQRTLIREAYQNLFQEDLIKRLESELSGDFERAMYRWILEPAEREALLANIAIKSADKNYQVIVEISCVLSPEELFAVRRAYHNKYKRCLEEDVAANTSGHLRQLLVGLVSSFRYGGSEINAKLAQSEADALHEAIKNKNKSNDEIIRILTTRSKTQLVATFNRYRDDHGIAITKKLSDEGSDEFHKAANLAISCINDHKKYYEKVLRNAMEHLGTAEDALTRVIVTRAEKDLKEIKEVYYKRNSVHLEHAVAKETSGDYKKFLLSLMGKEE*

>Glyma04g27100.2   sequence type=predicted peptide   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRWILEPAEREALLANIAIKSADKNYQVIVEISCVLSPEELFAVRRAYHNKYKRCLEEDVAANTSGHLRQLLVGLVSSFRYGGSEINAKLAQSEADALHEAIKNKNKSNDEIIRILTTRSKTQLVATFNRYRDDHGIAITKKLSDEGSDEFHKAANLAISCINDHKKYYEKVLRNAMEHLGTAEDALTRVIVTRAEKDLKEIKEVYYKRNSVHLEHAVAKETSGDYKKFLLSLMGKEE*

>Glyma04g27100.3   sequence type=predicted peptide   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLIAPSNHSPVEDAESLRKAVKGWGADGKAIIAILGHRNATQRTLIREAYQNLFQEDLIKRLESELSGDFERAMYRWILEPAEREALLANIAIKSADKNYQVIVEISCVLSPEELFAVRRAYHNKYKRCLEEDVAANTSGHLRQLLVGLVSSFRYGGSEINAKLAQSEADALHEAIKNKNKSNDEIIRILTTRSKTQLVATFNRYRDDHGIAITKKLSDEGSDEFHKAANLAISCINDHKKYYEKVLRNAMEHLGTAEDALTRVIVTRAEKDLKEIKEVYYKRNSVHLEHAVAKETSGDYKKFLLSLMGKEE*

>Glyma04g27100.4   sequence type=predicted peptide   gene model=Glyma04g27100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRWILEPAEREALLANIAIKSADKNYQVIVEISCVLSPEELFAVRRAYHNKYKRCLEEDVAANTSGHLRQLLVGLVSSFRYGGSEINAKLAQSEADALHEAIKNKNKSNDEIIRILTTRSKTQLVATFNRYRDDHGIAITKKLSDEGSDEFHKAANLAISCINDHKKYYEKVLRNAMEHLGTAEDALTRVIVTRAEKDLKEIKEVYYKRNSVHLEHAVAKETSGDYKKFLLSLMGKEE*

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