SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g27090): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g27090): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g27090

Feature Type:gene_model
Chromosome:Gm04
Start:31024461
stop:31025535
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g27090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17520AT Annotation by Michelle Graham. TAIR10: Hyaluronan / mRNA binding family | chr4:9771496-9773313 FORWARD LENGTH=360 SoyBaseE_val: 6.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR12299Panther HYALURONIC ACID-BINDING PROTEIN 4 JGI ISS
PTHR12299:SF4Panther NUCLEAR RNA BINDING PROTEIN A-LIKE PROTEIN JGI ISS
PF04774PFAM Hyaluronan / mRNA binding family JGI ISS
UniRef100_G7KU84UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Medicago truncatula RepID=G7KU84_MEDTR SoyBaseE_val: 2.00E-19ISS
UniRef100_I1N466UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N466_SOYBN SoyBaseE_val: 5.00E-31ISS

Expression Patterns of Glyma04g27090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g27090 not represented in the dataset
Glyma04g27090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g27090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g27090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g27090
>Glyma04g27090.1   sequence type=CDS   gene model=Glyma04g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGAAGTCAATTATCTAGGCCAGCCTCACCATGAAAATATGGTCAAACTTATTGGTTACTGCACAAATGGTAAAAACAAGCTTCTACCTGCAGTTAAAGAAGATGTTGTCGATGGAAACAAGGACAACCCTACTAATGAAACTCTGAAAAAGAGCCTAAAGATAAGTGGGATGCAGAGTTGTCATCAATTGATATCATCTAATTTAGATGTCAACAGTTCACTTTCTGATGAAATGACTCTGGAGGAATATGAAAAAGTGTTGGAAGAGAGAAAAAAGGCCTTCCAAGCACTCAAGACTAAAGAGAGAAAGGTGGACACTAAAGAGTTTGAATCCATGCAGGCCTTATCAAGCAAGAAAGTTAATCATGACATATTCATTAAACTGGAG
Predicted protein sequences of Glyma04g27090
>Glyma04g27090.1   sequence type=predicted peptide   gene model=Glyma04g27090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AEVNYLGQPHHENMVKLIGYCTNGKNKLLPAVKEDVVDGNKDNPTNETLKKSLKISGMQSCHQLISSNLDVNSSLSDEMTLEEYEKVLEERKKAFQALKTKERKVDTKEFESMQALSSKKVNHDIFIKLE






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo