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Report for Sequence Feature Glyma04g26840

Feature Type:gene_model
Chromosome:Gm04
Start:30809961
stop:30826632
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g26840
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61710AT Annotation by Michelle Graham. TAIR10: AUTOPHAGY 6 | chr3:22839477-22842253 REVERSE LENGTH=517 SoyBaseE_val: 0ISS
GO:0000045GO-bp Annotation by Michelle Graham. GO Biological Process: autophagic vacuole assembly SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006914GO-bp Annotation by Michelle Graham. GO Biological Process: autophagy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009846GO-bp Annotation by Michelle Graham. GO Biological Process: pollen germination SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0000407GO-cc Annotation by Michelle Graham. GO Cellular Compartment: pre-autophagosomal structure SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG2751 KOG Beclin-like protein JGI ISS
PTHR12768Panther BECLIN 1-RELATED JGI ISS
PTHR12768:SF3Panther BECLIN 1-RELATED JGI ISS
PF04111PFAM Autophagy protein Apg6 JGI ISS
UniRef100_Q4A189UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beclin 1 protein n=1 Tax=Glycine max RepID=Q4A189_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233A1F6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A1F6 related cluster n=1 Tax=unknown RepID=UPI000233A1F6 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g26840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g26840 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g141000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g26840
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g26840
>Glyma04g26840.1   sequence type=CDS   gene model=Glyma04g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGGCGAAAATAAGGGTCGGACTCGGACCTTCCCGGTGGATCCGAATGTTCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTAGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACGGGATGCAAGGGTCGTCCATTCACGTTGCCAGCAGTGTGCTGAGTACGACTAAAATGGACAATTCCTATGTTGTGTTGCCCAAGCAGAAACCTCAGGCTCAGGGAAATCCTCCTCGGCCACGCGGCGATGCTGCTGCACAGCCAGGGAAGGCCATGGAGGAGTCATTTGTGGTTGTGTACAAGTCCGAATCGGGGACCGATGGAAACGCGGTGCATTCGTCGGGCACAGGGGCTGATTCTGGTGGCCATTTGCCACCTCATAACTCTGGGTTTAATTCTACTATTACTGTCCTGACTCGAGCATTTGAGATTGCCACGACGCAGATGCAGGTTGAACAGCCTTCATGCCTTGACTGCATGAGGATTTTGTCAGATAAGCTTGATAAAGAGGTTGAAGATGTGAACAGGGACATTGAAGCTTATGAAGCCTGTCTTAAATGCTTGGAGGGGGAGGCTAGAGATGTCCTGAGTGAGGCTGATTTTCTTAAAGAGAAATTGAAGATTGAGGAAGAAGAACGAAGACTTGAAGCAGCAATTGAAGCAACCGAGAGACAGAATGCTGAAGTAAATGCTGAACTGAGGGAACTAGAGTTAAAATCAAGTCGCTTTAAAGAATTGGAGGAGCGGTATTGGCATGAGTTCAACAATTTTCAGTTTCAATTAATTTCTCATCAGGAGGAGAGAGATGCAATTTTGGCCAAGATTGAAGTTTCACAGGCACATTTAGAATTATTGAAGCGTACAAATGTGCTCAATGACGCCTTCCCCATTTCTCATGATGGAGAGTTTGGAACAATTAACAATTTTCGACTTGGAAGACTTCCTAAAATTCCTGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGACTTTGTTTTTAGCATGCCTCAAGGATTTCGCAGACTTTGCCAAATCTAAGGATCAAGAGAATAACATCCCACCTGAGAAATGTTTCAAATTGCCTTACAAGATTGAGAATGACAAGGTGGAAAACTATTCCATCACTCAAAGCTTCAATAAGCAGGAAAATTGGACTAAATCTCTCAAGTACACTCTTTGCAATTTGAAATGGGCCCTCTATTGGTTTGTTGGAAATACTAACTTCCAGCCCCTTTCAGCAATGGTATCTTCGCATGCTGAAGTGCCTGCTGTAGGGTCTCTGTACACGAAGCGTGGTGTTGATGCCAAATCTGAATCTCGAAATTGA
Predicted protein sequences of Glyma04g26840
>Glyma04g26840.1   sequence type=predicted peptide   gene model=Glyma04g26840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKGENKGRTRTFPVDPNVPRWVCQNCRNPLCIVGADSYADKFFNDPSRYGMQGSSIHVASSVLSTTKMDNSYVVLPKQKPQAQGNPPRPRGDAAAQPGKAMEESFVVVYKSESGTDGNAVHSSGTGADSGGHLPPHNSGFNSTITVLTRAFEIATTQMQVEQPSCLDCMRILSDKLDKEVEDVNRDIEAYEACLKCLEGEARDVLSEADFLKEKLKIEEEERRLEAAIEATERQNAEVNAELRELELKSSRFKELEERYWHEFNNFQFQLISHQEERDAILAKIEVSQAHLELLKRTNVLNDAFPISHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFQYRIKIIPMGSYPRITDTNNSTYELFGPVNLFWSTRYDKAMTLFLACLKDFADFAKSKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKSLKYTLCNLKWALYWFVGNTNFQPLSAMVSSHAEVPAVGSLYTKRGVDAKSESRN*






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