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A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G54500 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:20175792-20178737 REVERSE LENGTH=648 | SoyBase | E_val: 5.00E-124 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
UniRef100_A8MQN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dentin sialophosphoprotein-like protein n=2 Tax=Arabidopsis thaliana RepID=A8MQN2_ARATH | SoyBase | E_val: 2.00E-14 | ISS |
UniRef100_UPI000233A1F5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A1F5 related cluster n=1 Tax=unknown RepID=UPI000233A1F5 | SoyBase | E_val: 0 | ISS |
Glyma04g26800 not represented in the dataset |
Glyma04g26800 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.04g141400 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g26800.2 sequence type=CDS gene model=Glyma04g26800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTGTTTTCAGCTAGCTAACATAATATGGGGTGAAGGAGGTGAGAGTGATGATCATATTGTGCCTTATCCAGAGGTAAATGAAGATGTTAGCAACAAAAAAGAATGGAATCAAGAAGCTGCTGCGACTAAGCTCACTGAGCTGAAGAGACCGGAGGCTAAAACTGATTTTCATGAAAGAAAGCTAGGAAGCAGTTCCAACCTTGATAATAGTGGAGAACTACCTACCTCAGGATATGGAACAAATGCATGGCCTGACTTGGCTTTATCCAGTTCAGCTAAAATTGATCATGGTTCCCTGGGTACTGAAGTATCTAATAATTTAAGTGAACTTAGCAAATTGAGTTCATCAAGAGGTGAAGAAACTACACAACATGAAAAGCATGCTGAAATTTTCCAAAATGCTCATGAAGGTAAAGAGCAAGGTCATTTTGTTGATTATGGATGGGCCAACATAGGAAGTTTTGATGACCTTGATCGGATTTTTAGCAATGATGACCCTATATTTGGCCATGCAAGTCTTGATAGTTCTAATGAGCTTTGGTCGTCTAAAGATGTGAGTAACAATGTAGCACCTTTACCATTGGATACACCAAGTTCATCTGGTGCTTTAAGGAACAGAACTGAGTCTTTGGAAATCAAAGAAGAATATGTTCAATGTAGTGATGAATCATTGGACCTCAGCAATGAGAAGATTGGGGGTCCTGGATCCCAAGTTATAGAAAATTCATGCACAACCACAGCTAATGTGGGAAATGGTGGAGTTAGAAGTAAGCCTACTGGAAAGGAACAGCAGGTTTTTAGGCAAAAGAATCTTTTGAAAACTTGGAAAAAATCACTGGTAAAACAAGAGGAGAATACCTTGCAGGATTTCTATGATAATTGGTCTCCTTCAGCAGCACCGGCAAAACAATTTCAGAATCAATTGGCACCTTCTGGTATACAATCTTCTCCCTCTTCAATTCTGGGGCAGCCAAAGCAGATCCAAGGAGCTGAAACCCTATATCAGAATATCATAAATCCATTTGCGGCTTCTTCTGTGTATGGGAACCTTACTAATACATATCCTGCTATGCCAATGCTATCACAGACTCAGCCAGCACTTTCTGGGTACGAAGTGTCTCCTGGTATTGTGAATCCTGTGAATAATTTAGTGGACTCAGTCAAGCCTCAAATCATGACCCCTCAGGAGAAAATTGAAAAATTGAGGAGGCGGCAGCAAATGCAGGCAATGATTGCTATTCAGAAACAACAACAACAATTGGGCCATCAAGTTCCTAGTACTAGTAAATCAAGCACTCAAAAATGTCCTCCAGAAATTCAAAGTCATCTTAGTGATGGGACTGATGACGATCTAAGAACTCTTCCTGCTCTAGATCCACCAATTGAACAAGATGATTCTAATACAATGTCAGTGGCTGTTGGTAATGATTTCGTTGAAGATACCGTATTGTACAGACTTCAGGATATTATATCAAAGTTAGACATCAAAATAAGACTCTGCATCAGAGATAGTTTGTTCCGGTTGGCACAAAGGCATTATACTAGTGATACTAGCAGTACAAACAAAAGTAGCAGAGAAGAACTTGAAGTTGCTGCAAGAGAAGAAAGCATTAGCCAAAACAGATATGCCAGGATGCCTGATGTTGAAACAGAGACGAATCCCATTGATAGAACTGTGGCTCATTTACTTTTTCATAGGCCTATGGAGTTGACCCAAAACTATTCTGACAAGCTGGAGTCACCTATTTCTACCAAATGTGAAAGCAAAGCAGCTAACCCCTTGAACTTTCCAGTGAGTTGCTTACCAGATGAGGACTCGAAAAACAATCAACAACTTTCTCACCTTGGGTTTAAGAATCCTTGGGTTGATGCCCAGTCCATGGATCAAATTAAAAACAGTCCCTGCATAGACACGTCAGAGAATGCTTCAAACACACAGGAACTTGAAGCCTCTCAATGA
>Glyma04g26800.2 sequence type=predicted peptide gene model=Glyma04g26800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDCFQLANIIWGEGGESDDHIVPYPEVNEDVSNKKEWNQEAAATKLTELKRPEAKTDFHERKLGSSSNLDNSGELPTSGYGTNAWPDLALSSSAKIDHGSLGTEVSNNLSELSKLSSSRGEETTQHEKHAEIFQNAHEGKEQGHFVDYGWANIGSFDDLDRIFSNDDPIFGHASLDSSNELWSSKDVSNNVAPLPLDTPSSSGALRNRTESLEIKEEYVQCSDESLDLSNEKIGGPGSQVIENSCTTTANVGNGGVRSKPTGKEQQVFRQKNLLKTWKKSLVKQEENTLQDFYDNWSPSAAPAKQFQNQLAPSGIQSSPSSILGQPKQIQGAETLYQNIINPFAASSVYGNLTNTYPAMPMLSQTQPALSGYEVSPGIVNPVNNLVDSVKPQIMTPQEKIEKLRRRQQMQAMIAIQKQQQQLGHQVPSTSKSSTQKCPPEIQSHLSDGTDDDLRTLPALDPPIEQDDSNTMSVAVGNDFVEDTVLYRLQDIISKLDIKIRLCIRDSLFRLAQRHYTSDTSSTNKSSREELEVAAREESISQNRYARMPDVETETNPIDRTVAHLLFHRPMELTQNYSDKLESPISTKCESKAANPLNFPVSCLPDEDSKNNQQLSHLGFKNPWVDAQSMDQIKNSPCIDTSENASNTQELEASQ*
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