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Report for Sequence Feature Glyma04g26715

Feature Type:gene_model
Chromosome:Gm04
Start:30650879
stop:30653768
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g26715
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54490AT Annotation by Michelle Graham. TAIR10: RNA polymerase II fifth largest subunit, E | chr3:20173673-20175297 FORWARD LENGTH=233 SoyBaseE_val: 2.00E-51ISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003899GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity SoyBaseN/AISS
KOG3218 KOG RNA polymerase, 25-kDa subunit (common to polymerases I, II and III) JGI ISS
PTHR10535Panther DNA-DIRECTED RNA POLYMERASE II JGI ISS
PF01191PFAM RNA polymerase Rpb5, C-terminal domain JGI ISS
PF03871PFAM RNA polymerase Rpb5, N-terminal domain JGI ISS
UniRef100_Q2HW77UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=Q2HW77_MEDTR SoyBaseE_val: 1.00E-68ISS
UniRef100_UPI000233D2C9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D2C9 related cluster n=1 Tax=unknown RepID=UPI000233D2C9 SoyBaseE_val: 2.00E-109ISS

Expression Patterns of Glyma04g26715
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g26715 not represented in the dataset
Glyma04g26715 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g26715 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g141500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g26715
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g26715
>Glyma04g26715.1   sequence type=CDS   gene model=Glyma04g26715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCCAAGACAGAGGTTACGATGCCATTCAGCATGCAAACATTTCTCCCTCCCTCACCGAGTTCTGCTCCCGCTTCAGCCAAAACCCCAACCCCCAAACCCTCGACTTTTGTGTTCCGCATCTCTCTAACACAGTACAGGTTGTGTTTGTGGGGCCCAAGGAAATAAGAAAAGGGACAGTGAATGAGATATGTAGCCAGATTGCGGACAAGGGAAGCTTGAAATGGCTGATACTCGTTGTTAAGAGTAAAATGACTTCGTTTGCAAAGAAAGACTTGGAGAATTTTCCATTTAAAGTTGAGACTATCAAAATTGATGATTTGCTGGTCAATATCACAAAGCATGTGTTGCAGCCAAAGTATGAGATACTTACTGATGATGAGAAGCAAGCATTGCTCACCAAGCATAATTTGGATGAGAAGCAGCTCCCTCACATGTTGAAAACTGATACCATAGCTCGCTACTATGGGCTGGAGAAAGGGCAAGTTGTGAAAATCACTCACAGTGGTCCAGTGGTTAATTTTGATGTGTCTTACCGTTGTGTCGTGTAA
Predicted protein sequences of Glyma04g26715
>Glyma04g26715.1   sequence type=predicted peptide   gene model=Glyma04g26715   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQDRGYDAIQHANISPSLTEFCSRFSQNPNPQTLDFCVPHLSNTVQVVFVGPKEIRKGTVNEICSQIADKGSLKWLILVVKSKMTSFAKKDLENFPFKVETIKIDDLLVNITKHVLQPKYEILTDDEKQALLTKHNLDEKQLPHMLKTDTIARYYGLEKGQVVKITHSGPVVNFDVSYRCVV*






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