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Report for Sequence Feature Glyma04g26230

Feature Type:gene_model
Chromosome:Gm04
Start:30248773
stop:30257997
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g26230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08550AT Annotation by Michelle Graham. TAIR10: elongation defective 1 protein / ELD1 protein | chr3:2596513-2599515 FORWARD LENGTH=533 SoyBaseE_val: 0ISS
GO:0006084GO-bp Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process SoyBaseN/AISS
GO:0009663GO-bp Annotation by Michelle Graham. GO Biological Process: plasmodesma organization SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009831GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0016132GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PTHR10774Panther CALCIUM-DEPENDENT LIPID-BINDING PROTEIN (CALB RELATED) JGI ISS
PTHR10774:SF5Panther CALCIUM LIPID BINDING PROTEIN JGI ISS
UniRef100_G7J1N7UniRef Annotation by Michelle Graham. Most informative UniRef hit: SDL-1 protein n=1 Tax=Medicago truncatula RepID=G7J1N7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JWF3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWF3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g26230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g26230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g26230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g26230
>Glyma04g26230.1   sequence type=CDS   gene model=Glyma04g26230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCATCCCCAACCACCAGCTCTACTCTCCTTTCCGTACAACCCTATCTTCCTCTTCCTCCTCCTCTTCCCATTCCTTCACCTCGAAGATCCTTCTCCTCCTGACCATCCTCCCGGTGTCTTTGGCAGCCATAGCGTTCATCCTCCAATGGCGCGGCGGCATCACCGATCCGGCCACCCTCTCGTCGCCGCGTGGGTCCCACCACTACTTCCCCGGCATGGAGCCCTCTCCCCTCTCCCATGTCTCCCATAATTCTCACTCCCATTCTGACTGCGTCAATCTTGGCCGCACTAATTCTCCTTCCTTCCCTTACTACCACAACTGGAAGCTTGACTTTGAGGCCTCTCTCACCCCTAAGATCTGTGTTACAACTAGTACATCAGCAGGGCTTGAGCAGATTCTACCTTGGATGTTTTATCATAAAGTCATTGGGAAGGCTGCTTCTCCTGAAGTATCAAATGTCCTAGAATCAATTCCTGGTGTTAAGGTTGTATATAGAACAAAACAGCTGGAAGAACAACAGGCTAAGAGCCGTATTTGGAATGAGACATGGCTGGCAGGTTTCTTTTATAAACCCTGCAATTATGAACTTTTTGTGAAGCAATCTCTCAACATGGAGATGGCTATTGTTATGGCAAGGGATTCTGGCATGAACTGGATTCTTCATCTTGATACAGATGAATTAATGCACCCAGCTGGTGCTCGGGAATATTCTTTAAGGCAGTTGCTCCTTGATGTTCCAGGACATGTTGATATGGTCATATTTCCTAACTATGAGAGCAGTATCGAGCGAGATGATATCAAAGAACCTTTTAGTGAGGTATCGATGTTTAAAAAGAATTATGACCATCTTCCAAAGGATACATACTTTGGCATGTATAAAGATTCTGTACGTGGCAATCCAAACTACTTCCTGACTTACGGAAATGGAAAATCAGCTGCTCGGATACAAGATCATCTTCGGCCTAATGGTGCACATAGATGGCATAATTATATGAAAACCCCAAATGAAATCAAATTGGAAGAGGCTGCTGTTTTGCATTACACATATGCTAAATTCTCAGACTTAACTTCTAGACGTGACCGCTGTGGTTGCAAACCTACAAAAGAAGATGTCAAAAGATGCTTCATGTTGGAATTTGACAGAACTGCATTTATCATTGCTTCAACTGCAACTGAAGAAGAAATGATGAAGTGGTATAATGAACATGTTGTGTGGGGTGATAAAGACCTGAAGATGAAACTTTTGAGGAAGGGAGTATTGACTCGTATATATTCTCCCATGGTCATAATTCAAAGTTTAAGGGAATCTGGAGTCTTTAGTTCTGTCATTGCATCTGCCCCATCACTTTCTAAAGAAAACTTTCTGCTGTCAATTGATAGTAGTAATTCTTCAAGAGTCTCTGCCTCTGTAACCCTCCCTTCTAGAAAGGTTGGAAGGACCAAAGAATCTCAAGCAGCTACACGGAAGGCTCTGTCTGTTGAATCTGCTGCATTTCACGAAGTGGCTGTACCACCACTGTCTCCCCCAGTAGTAGATGACAATGACCTCATTTCACATAATTGA
Predicted protein sequences of Glyma04g26230
>Glyma04g26230.1   sequence type=predicted peptide   gene model=Glyma04g26230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIPNHQLYSPFRTTLSSSSSSSSHSFTSKILLLLTILPVSLAAIAFILQWRGGITDPATLSSPRGSHHYFPGMEPSPLSHVSHNSHSHSDCVNLGRTNSPSFPYYHNWKLDFEASLTPKICVTTSTSAGLEQILPWMFYHKVIGKAASPEVSNVLESIPGVKVVYRTKQLEEQQAKSRIWNETWLAGFFYKPCNYELFVKQSLNMEMAIVMARDSGMNWILHLDTDELMHPAGAREYSLRQLLLDVPGHVDMVIFPNYESSIERDDIKEPFSEVSMFKKNYDHLPKDTYFGMYKDSVRGNPNYFLTYGNGKSAARIQDHLRPNGAHRWHNYMKTPNEIKLEEAAVLHYTYAKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRTAFIIASTATEEEMMKWYNEHVVWGDKDLKMKLLRKGVLTRIYSPMVIIQSLRESGVFSSVIASAPSLSKENFLLSIDSSNSSRVSASVTLPSRKVGRTKESQAATRKALSVESAAFHEVAVPPLSPPVVDDNDLISHN*






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