Report for Sequence Feature Glyma04g25590
Feature Type: gene_model
Chromosome: Gm04
Start: 29510782
stop: 29515148
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g25590
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G47700 AT
Annotation by Michelle Graham. TAIR10: RINT-1 / TIP-1 family | chr3:17583773-17586578 REVERSE LENGTH=795
SoyBase E_val: 0 ISS
GO:0006623 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole
SoyBase N/A ISS
GO:0006888 GO-bp
Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0042406 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2218
KOG
ER to golgi transport protein/RAD50-interacting protein 1
JGI ISS
PTHR13520 Panther
RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1)
JGI ISS
PF04437 PFAM
RINT-1 / TIP-1 family
JGI ISS
UniRef100_G7L2C9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RAD50-interacting protein n=1 Tax=Medicago truncatula RepID=G7L2C9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JWE9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWE9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g25590
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma04g25590 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g175500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g25590
Coding sequences of Glyma04g25590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g25590.1 sequence type=CDS gene model=Glyma04g25590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTGGCTCCAAACACTGCCTCCATCCTCTCACATCTCGCCCTCCGCACTCTCCTTCCTCGACCACAGGCTCCACACGCAGCTCGCCGTTGCCGAGGCTCCCACCTTCGCCGCCGAGCTCCAGACTCAGTGCTCCGAGTTGGATCGCTCGCTCGACGAGTTGACTCGGAGGCTCGGAGCTGGTCTCTCCGCCTACGCCTCCTTCTCCGGCGAAATCCACGGCCTCTTCGGGGCCGTTACTGATAGGCTGGTCGCTCTCTCCTCCACCGTCGTGCCAGATGGAGGAAGAGGCGAAGGGGATGGCAAGGGTTTCAGAGAGGAACTTGCGACTTTGGCCAAGGAAGTGGCTAGGTTGGAGACGGTTCGTGTTTATGCAGAGAAAGCACTGAAACTTGATACTTTGGTTGGTGATATTGAGGATGCTGTATCATTTACCATGAGCAAGAACATAAGGAAACATTCTAGTCAAAATTCACAAGAAATGCATATGCTTGCTATTAAAACACTGAAAACAACAGAAGACATATTAACTTCAATTACAAAAGCACATCCTCAGTGGAAGCATCTTGTATCAGCTGTTGATCACAGAGTAGACCGAGCTCTTGCTATTTTGAGGCCCCAGGCAATTGCTGAGCATCGGGCACTTCTTACTTCACTTGGATGGCCCCCACCTCTTTCTGCCTTAACCTCCTCTAACTCAGATGCAAGTACTGCAAATCAAGTTGTGAATCCTCTACTGAGCATGCATGTGGATCTTAAAGTCCAGTACTCTGAAAACTTTCTTGCTTTGTGCAACCTACAGGAGTTGCAAAGGCAAAGGAAAGCTAGGCAACTTGAGGGCCATGACAGGGAAGTTGCTCTACGACAACCACTTTGGGTAATAGAAGAGCTTGTCAATCCCTTATCATTGGCTTCCCAACGACATTTCTCAAAATGGGTTGATAAACCAGAATTTATTTTTACTCTTGTATATAAAATCACAAGGGACTATGTTGACTCTATGGATGAATTGTTGCAGCCATTAGTTGATGAAGCAAAGTTGCTTGGTTATAGTTGTAGAGAAGAATGGATCTCAGCAATGGTAACCTCCTTAACCACATACTTGGCGAAAGAAATTTTCCCTAGTTACATTAGTCAACTAGATGGAGAGAGTGTTACAGGAATTCAGTCATCTGCTAGAATATCATGGCTACATCTCATTGATTTGATGATAGCTTTTGATAAAAGGATTAAGTCTTTGGTAGAGCATTCTGGGATCTTGCTATCCTTTGATGACGATATCATGCAGAAAATTTCTTCTCTATCTGTATTTTGTGATCGTCCAGATTGGCTTGATCTATGGGCTGAAATTGAGCTAGGTGATGTCCTAGATAAGTTGAAACCAGACATCCAAGATGAGAATAATTGGAGAAAGAAAGTTGAAGGTGTGGTTCTTTCATCCTATACTGATGATCACAAGTCCCCTCTGGTTTCTAATGCCTTTCTTCGCCATCTAGCATCTGTTATTGATCGTTGCCGATCATTGCCTAGTGTAAGTTTGAGGTCAAAATTTCTCAGATTAGCAGGTATTCCTATTATAAGAAATTTTTTTGATTCCATACTTATCCGCTGCCAAGAAGCTGAAGGTTTGACTGCCTTAACTGATGATGATGCTGTAATTAAAGTTACAATTTCTGTCAATGCTGCTCATTACTTTGAATCTGTTCTAAAGGAATGGTCTGAGGATGTCTTTTTCCTTGAGATGGGAATGGATGAGGATGATAAAACAGAATTGGAAAGTAATTCAAATAGTTATGGTGAAGTGTTGCCAGAGAGTTCCAGAAGGGTTATCTTTGATGATGAGATAAAAAAGTTGGAAGAGTTCAGAACAGAGTGGGTTGAAAAGATTTCCCTAGTTATTTTGAGAGGTTTTGATTCTCATTCTCGAGATTATGTGAAGAACAAAAGGCAATGGCAAAAGGGTGAAGAAGGATGGGCCGTGTCAAAGACTTTAATACAAGCCCTGGATTATCTTCAGAGTAAAATGTCAGTGGTAGAAGTAAGTTTGAATGGTAGGGATTTTATTGGGGTTTGGAGAAGTTTGGCAGCAGGAATTGATCAATTGATTTTTAATGGTATCCTCATAAGCAATGTAAAATTTCACAATAGTGGTGTTGAAAGATTTGGTAGCGACTTGGATGTTTTATTTGGGGTATTTGGAGCATGGTGTTTGCGACCTGAAGGTTTTTTCCCAAAATCAAGTGAAGGTCTGAAGTTGTTGAAGATGGATGAAAATAGACTGCAAGAATGTATGGGAGGGGGGAAGAGATGGTTGAAGGAGAATGGGCTCAGGCGTTTGAGTGTAACTGAAGCAGAAAAGATTTTGAAGAGCAGGGTGTTCACAAGTTGA
Predicted protein sequences of Glyma04g25590
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g25590.1 sequence type=predicted peptide gene model=Glyma04g25590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEWLQTLPPSSHISPSALSFLDHRLHTQLAVAEAPTFAAELQTQCSELDRSLDELTRRLGAGLSAYASFSGEIHGLFGAVTDRLVALSSTVVPDGGRGEGDGKGFREELATLAKEVARLETVRVYAEKALKLDTLVGDIEDAVSFTMSKNIRKHSSQNSQEMHMLAIKTLKTTEDILTSITKAHPQWKHLVSAVDHRVDRALAILRPQAIAEHRALLTSLGWPPPLSALTSSNSDASTANQVVNPLLSMHVDLKVQYSENFLALCNLQELQRQRKARQLEGHDREVALRQPLWVIEELVNPLSLASQRHFSKWVDKPEFIFTLVYKITRDYVDSMDELLQPLVDEAKLLGYSCREEWISAMVTSLTTYLAKEIFPSYISQLDGESVTGIQSSARISWLHLIDLMIAFDKRIKSLVEHSGILLSFDDDIMQKISSLSVFCDRPDWLDLWAEIELGDVLDKLKPDIQDENNWRKKVEGVVLSSYTDDHKSPLVSNAFLRHLASVIDRCRSLPSVSLRSKFLRLAGIPIIRNFFDSILIRCQEAEGLTALTDDDAVIKVTISVNAAHYFESVLKEWSEDVFFLEMGMDEDDKTELESNSNSYGEVLPESSRRVIFDDEIKKLEEFRTEWVEKISLVILRGFDSHSRDYVKNKRQWQKGEEGWAVSKTLIQALDYLQSKMSVVEVSLNGRDFIGVWRSLAAGIDQLIFNGILISNVKFHNSGVERFGSDLDVLFGVFGAWCLRPEGFFPKSSEGLKLLKMDENRLQECMGGGKRWLKENGLRRLSVTEAEKILKSRVFTS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
