SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G47700 | AT | Annotation by Michelle Graham. TAIR10: RINT-1 / TIP-1 family | chr3:17583773-17586578 REVERSE LENGTH=795 | SoyBase | E_val: 0 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0042406 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to endoplasmic reticulum membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2218 | KOG | ER to golgi transport protein/RAD50-interacting protein 1 | JGI | ISS | |
| PTHR13520 | Panther | RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1) | JGI | ISS | |
| PF04437 | PFAM | RINT-1 / TIP-1 family | JGI | ISS | |
| UniRef100_G7L2C9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RAD50-interacting protein n=1 Tax=Medicago truncatula RepID=G7L2C9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JWE9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWE9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g25590 not represented in the dataset |
Glyma04g25590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g175500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g25590.1 sequence type=CDS gene model=Glyma04g25590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTGGCTCCAAACACTGCCTCCATCCTCTCACATCTCGCCCTCCGCACTCTCCTTCCTCGACCACAGGCTCCACACGCAGCTCGCCGTTGCCGAGGCTCCCACCTTCGCCGCCGAGCTCCAGACTCAGTGCTCCGAGTTGGATCGCTCGCTCGACGAGTTGACTCGGAGGCTCGGAGCTGGTCTCTCCGCCTACGCCTCCTTCTCCGGCGAAATCCACGGCCTCTTCGGGGCCGTTACTGATAGGCTGGTCGCTCTCTCCTCCACCGTCGTGCCAGATGGAGGAAGAGGCGAAGGGGATGGCAAGGGTTTCAGAGAGGAACTTGCGACTTTGGCCAAGGAAGTGGCTAGGTTGGAGACGGTTCGTGTTTATGCAGAGAAAGCACTGAAACTTGATACTTTGGTTGGTGATATTGAGGATGCTGTATCATTTACCATGAGCAAGAACATAAGGAAACATTCTAGTCAAAATTCACAAGAAATGCATATGCTTGCTATTAAAACACTGAAAACAACAGAAGACATATTAACTTCAATTACAAAAGCACATCCTCAGTGGAAGCATCTTGTATCAGCTGTTGATCACAGAGTAGACCGAGCTCTTGCTATTTTGAGGCCCCAGGCAATTGCTGAGCATCGGGCACTTCTTACTTCACTTGGATGGCCCCCACCTCTTTCTGCCTTAACCTCCTCTAACTCAGATGCAAGTACTGCAAATCAAGTTGTGAATCCTCTACTGAGCATGCATGTGGATCTTAAAGTCCAGTACTCTGAAAACTTTCTTGCTTTGTGCAACCTACAGGAGTTGCAAAGGCAAAGGAAAGCTAGGCAACTTGAGGGCCATGACAGGGAAGTTGCTCTACGACAACCACTTTGGGTAATAGAAGAGCTTGTCAATCCCTTATCATTGGCTTCCCAACGACATTTCTCAAAATGGGTTGATAAACCAGAATTTATTTTTACTCTTGTATATAAAATCACAAGGGACTATGTTGACTCTATGGATGAATTGTTGCAGCCATTAGTTGATGAAGCAAAGTTGCTTGGTTATAGTTGTAGAGAAGAATGGATCTCAGCAATGGTAACCTCCTTAACCACATACTTGGCGAAAGAAATTTTCCCTAGTTACATTAGTCAACTAGATGGAGAGAGTGTTACAGGAATTCAGTCATCTGCTAGAATATCATGGCTACATCTCATTGATTTGATGATAGCTTTTGATAAAAGGATTAAGTCTTTGGTAGAGCATTCTGGGATCTTGCTATCCTTTGATGACGATATCATGCAGAAAATTTCTTCTCTATCTGTATTTTGTGATCGTCCAGATTGGCTTGATCTATGGGCTGAAATTGAGCTAGGTGATGTCCTAGATAAGTTGAAACCAGACATCCAAGATGAGAATAATTGGAGAAAGAAAGTTGAAGGTGTGGTTCTTTCATCCTATACTGATGATCACAAGTCCCCTCTGGTTTCTAATGCCTTTCTTCGCCATCTAGCATCTGTTATTGATCGTTGCCGATCATTGCCTAGTGTAAGTTTGAGGTCAAAATTTCTCAGATTAGCAGGTATTCCTATTATAAGAAATTTTTTTGATTCCATACTTATCCGCTGCCAAGAAGCTGAAGGTTTGACTGCCTTAACTGATGATGATGCTGTAATTAAAGTTACAATTTCTGTCAATGCTGCTCATTACTTTGAATCTGTTCTAAAGGAATGGTCTGAGGATGTCTTTTTCCTTGAGATGGGAATGGATGAGGATGATAAAACAGAATTGGAAAGTAATTCAAATAGTTATGGTGAAGTGTTGCCAGAGAGTTCCAGAAGGGTTATCTTTGATGATGAGATAAAAAAGTTGGAAGAGTTCAGAACAGAGTGGGTTGAAAAGATTTCCCTAGTTATTTTGAGAGGTTTTGATTCTCATTCTCGAGATTATGTGAAGAACAAAAGGCAATGGCAAAAGGGTGAAGAAGGATGGGCCGTGTCAAAGACTTTAATACAAGCCCTGGATTATCTTCAGAGTAAAATGTCAGTGGTAGAAGTAAGTTTGAATGGTAGGGATTTTATTGGGGTTTGGAGAAGTTTGGCAGCAGGAATTGATCAATTGATTTTTAATGGTATCCTCATAAGCAATGTAAAATTTCACAATAGTGGTGTTGAAAGATTTGGTAGCGACTTGGATGTTTTATTTGGGGTATTTGGAGCATGGTGTTTGCGACCTGAAGGTTTTTTCCCAAAATCAAGTGAAGGTCTGAAGTTGTTGAAGATGGATGAAAATAGACTGCAAGAATGTATGGGAGGGGGGAAGAGATGGTTGAAGGAGAATGGGCTCAGGCGTTTGAGTGTAACTGAAGCAGAAAAGATTTTGAAGAGCAGGGTGTTCACAAGTTGA
>Glyma04g25590.1 sequence type=predicted peptide gene model=Glyma04g25590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEWLQTLPPSSHISPSALSFLDHRLHTQLAVAEAPTFAAELQTQCSELDRSLDELTRRLGAGLSAYASFSGEIHGLFGAVTDRLVALSSTVVPDGGRGEGDGKGFREELATLAKEVARLETVRVYAEKALKLDTLVGDIEDAVSFTMSKNIRKHSSQNSQEMHMLAIKTLKTTEDILTSITKAHPQWKHLVSAVDHRVDRALAILRPQAIAEHRALLTSLGWPPPLSALTSSNSDASTANQVVNPLLSMHVDLKVQYSENFLALCNLQELQRQRKARQLEGHDREVALRQPLWVIEELVNPLSLASQRHFSKWVDKPEFIFTLVYKITRDYVDSMDELLQPLVDEAKLLGYSCREEWISAMVTSLTTYLAKEIFPSYISQLDGESVTGIQSSARISWLHLIDLMIAFDKRIKSLVEHSGILLSFDDDIMQKISSLSVFCDRPDWLDLWAEIELGDVLDKLKPDIQDENNWRKKVEGVVLSSYTDDHKSPLVSNAFLRHLASVIDRCRSLPSVSLRSKFLRLAGIPIIRNFFDSILIRCQEAEGLTALTDDDAVIKVTISVNAAHYFESVLKEWSEDVFFLEMGMDEDDKTELESNSNSYGEVLPESSRRVIFDDEIKKLEEFRTEWVEKISLVILRGFDSHSRDYVKNKRQWQKGEEGWAVSKTLIQALDYLQSKMSVVEVSLNGRDFIGVWRSLAAGIDQLIFNGILISNVKFHNSGVERFGSDLDVLFGVFGAWCLRPEGFFPKSSEGLKLLKMDENRLQECMGGGKRWLKENGLRRLSVTEAEKILKSRVFTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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