Glyma04g24950 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g24950): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g24950): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g24950

Feature Type:	gene_model
Chromosome:	Gm04
Start:	28634592
stop:	28648532
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g24950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30360	AT	Annotation by Michelle Graham. TAIR10: cyclic nucleotide-gated channel 17 \| chr4:14855060-14857779 REVERSE LENGTH=720	SoyBase	E_val: 0	ISS
GO:0006811	GO-bp	Annotation by Michelle Graham. GO Biological Process: ion transport	SoyBase	N/A	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005249	GO-mf	Annotation by Michelle Graham. GO Molecular Function: voltage-gated potassium channel activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF7	Panther	POTASSIUM CHANNEL PROTEIN EAG-RELATED	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF00520	PFAM	Ion transport protein	JGI		ISS
UniRef100_G7J2T6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated channel n=1 Tax=Medicago truncatula RepID=G7J2T6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JWE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JWE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g24950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g24950 not represented in the dataset	Glyma04g24950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g24950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g157200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g24950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g24950

Limit To All Plant Sequences

>Glyma04g24950.1   sequence type=CDS   gene model=Glyma04g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAAAAAGGGCAAGCTTGCCAGGTTCTACACGGATGGTAAAAAGCATAAGCAATCGTTTTGGGGAGCAAGAGCAACTGAGCCTCCAGCACTTAAACCTAGCAATTTGCTACCACTAGGGAAAAATAGAATTGCTGAAACATTTAGAATTGGAGGATCGAAGGTGTTCCCGGAGGACCATGAGCCGTGGCGTAAAAGAATACTTGACCCGGGTAGCGATATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCCTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTAATAGAAAACACAGGGTCTACATGTGTAAGGACAGACCTAACACTGCGCATTGTCGTGACCTTTCTTCGCACTATTGCAGACCTTTTTTATCTGTTGCACCTGATAATTAAGTTTAGGACGGCATATGTGGCACCAAGCTCACGGGTATTTGGCAGGGGTGAACTTGTCATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTTCAATATGTTCCGAGATTATATTTGATTTTTCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATGTTTTAGGGGCAGCTTGGTATCTTCTATCCGTGGACCGATACACTACTTGTTGGAAATCCTTTTGCAAAAAGGAACATGATCCTGAAAATTGCTTTCTTTATCTAGACTGCACTTCGTTGAATATTAAGCTGCGCGAGATATGGGCAAATAGTACAAGTGTGTTTAGCAGCTGTGATCCCAGTAATGATAATATTAATTTCAAGTATGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTCTCTTCAAACTTTATCCCAAAGTACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAGTTCTTATGGGCAGAATCTAGAAACTAGCACGTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCCCATTTAATTGGGAACATGCAGACTTATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACCATTCTACGTGCCTTACCTGCTGATCTTCGCCGTGATATACAGCGGCATTTGTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCGGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACAAATGGCGGCCGTAGTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGGGAGGAACTTCTTTCTTGGGCTTTACTCCCCAAATCCACCATTAATTTGCCTTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCCGAAGACCTCAAGTTTGTTGCTAATCAATTTAGGCGCCTTCACAGTAAGAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCTTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATGACTATGAAAGACCTCAGTTTGAGGGAAACCATTCCTTTAGACGAAGCAGTAGCTGGTGAGAGAAAACATGGGGACTATTCTGCTGGTTCAAATTCAACTCAGACTAAATTGAACCTTGGGGCTACAATTCTTGCTTCGAGATTTGCTGCTAACACACGAAGAGGGGCTCTGAAGATGAAAGATGACATGCCCCAGTTACAGAAGCCTGAAGAACCTGACTTTTCCACTGAAGCTGACGATGATTAG

Predicted protein sequences of Glyma04g24950

Limit To All Plant Sequences

>Glyma04g24950.1   sequence type=predicted peptide   gene model=Glyma04g24950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKKGKLARFYTDGKKHKQSFWGARATEPPALKPSNLLPLGKNRIAETFRIGGSKVFPEDHEPWRKRILDPGSDIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSTCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRTPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCWKSFCKKEHDPENCFLYLDCTSLNIKLREIWANSTSVFSSCDPSNDNINFKYGIFENAVKKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRSGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMTMKDLSLRETIPLDEAVAGERKHGDYSAGSNSTQTKLNLGATILASRFAANTRRGALKMKDDMPQLQKPEEPDFSTEADDD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain