SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18490 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) | chr1:6367116-6368640 FORWARD LENGTH=282 | SoyBase | E_val: 2.00E-113 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0047800 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity | SoyBase | N/A | ISS |
| KOG4281 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR22966 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF07847 | PFAM | Protein of unknown function (DUF1637) | JGI | ISS | |
| UniRef100_E6NU47 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL10I11.3 protein n=1 Tax=Jatropha curcas RepID=E6NU47_9ROSI | SoyBase | E_val: 5.00E-133 | ISS |
| UniRef100_I1JWE2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWE2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma04g24910 not represented in the dataset |
Glyma04g24910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g156900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g24910.1 sequence type=CDS gene model=Glyma04g24910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTTCTCTTCACTTCGCAGGTACTTTAGTATGAGGCACCAAAGCTCCAAGGTTCAGGCTTTGTATGAACATTGCAAAACCATCTTATCGCCCTCTGGATCACCCCCTCCTTCGTCCCAAGCTTTGCAGAAGCTTTCTTCGATTCTGGACACTATTCAACCTGCTGATGTTGGCCTTAAAGAAGAAATTGCAGACGATGATCGAGGGCATGGATTTTTTGGCGCTAATGCACTTAGTAGATTAGCTCGATGGGCTCAACCAATAACTTATGTAGACATTCATGAATGTGATAGTTTTACGATGTGTATATTTTGTTTCCCTACTTCTTCAGTTATTCCTCTCCATGACCATCCTGGGATGACTGTATTTAGCAAACTTCTCTATGGCTCTTTACATGTGAAAGCTTATGACTGGGTTGAGCCTCCCTGCATCATAGAAAGCAAAGAACCAGGATATGCTCAAGTAAGACTAGCAAAGTTAGCAGTTGATAAGGTCTTGAATGCACCGTGTGATACATCAGTTTTATATCCCAAACACGGTGGAAATCTGCACTGTTTCACAGCAGTGACACCTTGTGCCATGCTAGACATTCTCACACCTCCTTACAGAGAAGAGGAAGGAAGGAGGTGTACATACTATCATGATTATCCTTATTCAGCATTCTCAGTTGCAAATGCACCTATATGTGACGGGGAAGAGGAGGAATATGCATGGCTCACAGAGTTAGAATCACCTAGTGATCTTTATATGCGCCAGGGGGTATATGCTGGTCCAGCTATTCAGCTTTAG
>Glyma04g24910.1 sequence type=predicted peptide gene model=Glyma04g24910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVFSSLRRYFSMRHQSSKVQALYEHCKTILSPSGSPPPSSQALQKLSSILDTIQPADVGLKEEIADDDRGHGFFGANALSRLARWAQPITYVDIHECDSFTMCIFCFPTSSVIPLHDHPGMTVFSKLLYGSLHVKAYDWVEPPCIIESKEPGYAQVRLAKLAVDKVLNAPCDTSVLYPKHGGNLHCFTAVTPCAMLDILTPPYREEEGRRCTYYHDYPYSAFSVANAPICDGEEEEYAWLTELESPSDLYMRQGVYAGPAIQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
