Glyma04g24716 - SoyBase

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Report for Sequence Feature Glyma04g24716

Feature Type:	gene_model
Chromosome:	Gm04
Start:	28303492
stop:	28306705
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g24716

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G28050	AT	Annotation by Michelle Graham. TAIR10: Cytidine/deoxycytidylate deaminase family protein \| chr5:10044209-10045755 REVERSE LENGTH=185	SoyBase	E_val: 2.00E-50	ISS
GO:0009061	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaerobic respiration	SoyBase	N/A	ISS
GO:0009218	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide metabolic process	SoyBase	N/A	ISS
GO:0019690	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine deoxyribonucleoside interconversion	SoyBase	N/A	ISS
GO:0019692	GO-bp	Annotation by Michelle Graham. GO Biological Process: deoxyribose phosphate metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR11079	Panther	CYTOSINE DEAMINASE	JGI		ISS
PTHR11079:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00383	PFAM	Cytidine and deoxycytidylate deaminase zinc-binding region	JGI		ISS
UniRef100_B4FPE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytidine/deoxycytidylate deaminase family protein n=1 Tax=Zea mays RepID=B4FPE0_MAIZE	SoyBase	E_val: 5.00E-49	ISS
UniRef100_I1JWD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JWD9_SOYBN	SoyBase	E_val: 5.00E-61	ISS

Expression Patterns of Glyma04g24716

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g24716 not represented in the dataset	Glyma04g24716 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g24716 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g24716

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g24716

Limit To All Plant Sequences

>Glyma04g24716.2   sequence type=transcript   gene model=Glyma04g24716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTATATACACTGCTTTTTTTAAATAAACGATTTTCACTGTAAAAGTAAAAATATATACCGTGTTTCTTTTTATAAACAACACTATAATTACTTAATAAAATTAAAAGAATTAAAAAATATACAGCGCCTTTTCAAATCAGCGTTGTATATTCAGCGCTTAAAAAAACGAAGACAATCTACAGCGCGTTTTTTTTTTTTTACTCTCCGTCTCGTGCTCAATTTCCTCTCTGCCTCGCGCCCAACCCTTCTTCCCTCGCGAACCCTCTCGTCTTCATCGACCTCTTTGATGGGAAACAAGAGAAGGAGAAGAGGGAAAAGAAACGAAAGGAAGGAAGGAGAAGGGGCGTGAAGGTTACATCTGGTGGCTCCGATGGCAGATTTGGTGGCTTCGAGGCGCATGCGACAATGTGAAACCTCGATGGATGAAGTTTATCAGAACACTGGCAGTGAGCATGAGGCCAAATGGCATAACATAAGTAACTGTGCTGGAATGCTCTTCAGTACCAGGTTCATCACTTTTCTTAATTCCTATTGATTCAGAACACCGGCAGTGAGCATGAGGCCAAAAGGTTTGGCTGCACTTAATAAATGGTCTCTCTTGCTACATTTTTCCTTTGTTTGGCATATGATTTAACTCATCCAGCAGTGCCCTTGTTGTAAGATATATCATTTTTTTAGTTAATTCAACCAGAATGTGCATGAATGCTAATCATGTTGGAGAAATTAGACTGATTGGTTCTGGTTGTAACTTCAAGGAATAATTTGGAGTATTTTTTATGAAAATCTGTTCAAGAAGCATATAAAGGGGTAAGATTGCAAAGATGGAGGCCCTTTTGGTGCTGTTATAGTTCATAATGATGAAATGGTTGCTAGTTGTCACAACATGGTTCTGTGTAACACAGACCCAACTGCTCATGCTGCGGTGACAGCAATAAGAGAGGCTTGTAAGAAGCTTAAGAAGATAGAACTTGCAGATTGCGAAATATATGCTTCTTGTGAGCCTTGTCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGCAATTGCTATTGGGTTTTGATGATTTCATTGCAGATGCCTTGCAAGGTACTGGATTCTATCAGAAAGTAACATTGGAAATTAAGAGAGCTGATGGTATATCATTGCTGAAGAGCTAA

Coding sequences of Glyma04g24716

Limit To All Plant Sequences

>Glyma04g24716.1   sequence type=CDS   gene model=Glyma04g24716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTAGTTGTCACAACATGGTTCTGTGTAACACAGACCCAACTGCTCATGCTGCGGTGACAGCAATAAGAGAGGCTTGTAAGAAGCTTAAGAAGATAGAACTTGCAGATTGCGAAATATATGCTTCTTGTGAGCCTTGTCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGCAATTGCTATTGGGTTTTGATGATTTCATTGCAGATGCCTTGCAAGGTACTGGATTCTATCAGAAAGTAACATTGGAAATTAAGAGAGCTGATGGTATATCATTGCTGAAGAGCTAA

>Glyma04g24716.2   sequence type=CDS   gene model=Glyma04g24716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTAGTTGTCACAACATGGTTCTGTGTAACACAGACCCAACTGCTCATGCTGCGGTGACAGCAATAAGAGAGGCTTGTAAGAAGCTTAAGAAGATAGAACTTGCAGATTGCGAAATATATGCTTCTTGTGAGCCTTGTCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGCAATTGCTATTGGGTTTTGATGATTTCATTGCAGATGCCTTGCAAGGTACTGGATTCTATCAGAAAGTAACATTGGAAATTAAGAGAGCTGATGGTATATCATTGCTGAAGAGCTAA

Predicted protein sequences of Glyma04g24716

Limit To All Plant Sequences

>Glyma04g24716.1   sequence type=predicted peptide   gene model=Glyma04g24716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASCHNMVLCNTDPTAHAAVTAIREACKKLKKIELADCEIYASCEPCPMCFGAIHLSRIKQLLLGFDDFIADALQGTGFYQKVTLEIKRADGISLLKS*

>Glyma04g24716.2   sequence type=predicted peptide   gene model=Glyma04g24716   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVASCHNMVLCNTDPTAHAAVTAIREACKKLKKIELADCEIYASCEPCPMCFGAIHLSRIKQLLLGFDDFIADALQGTGFYQKVTLEIKRADGISLLKS*

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