Glyma04g24285 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma04g24285): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma04g24285): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma04g24285

Feature Type:	gene_model
Chromosome:	Gm04
Start:	27847557
stop:	27853984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g24285

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38950	AT	Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein \| chr4:18154606-18158461 REVERSE LENGTH=836	SoyBase	E_val: 1.00E-30	ISS
GO:0007017	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based process	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF11995	PFAM	Domain of unknown function (DUF3490)	JGI		ISS
UniRef100_B9RHD8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RHD8_RICCO	SoyBase	E_val: 2.00E-48	ISS
UniRef100_UPI0002339528	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339528 related cluster n=1 Tax=unknown RepID=UPI0002339528	SoyBase	E_val: 3.00E-114	ISS

Expression Patterns of Glyma04g24285

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g24285 not represented in the dataset	Glyma04g24285 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g24285 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g155500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g24285

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g24285

Limit To All Plant Sequences

>Glyma04g24285.1   sequence type=CDS   gene model=Glyma04g24285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAGGACTCCGGCCAGTAGTTTTAAAAAATGCTTCCCTAGAAGACCAGATGGATTGCAGAGAAAGTTCCTTCCATTAACTTATGGTTCTTCCACAAAATTTCCAATGAATGGCTCTCCATCTTCTATTGGAAGCCCTTTTATGGATGAGTTAAGAACCAACAACATGAGATCATATGCTAATGAAGATGTTTCTAGCCTCCAAACTTTTGTTGCTGGGATGAAGGAAATGGATCAACAAGCAGAGACAACAACTTTTAGATTTGAAAATAATATGAAAGATGTAGGTGTGGGATCAATGTTAGAGGCACCTGAATCTCCTGTAGAATGGCCTATGCAATTCAAGCAACAACAAACAGAAATAGTGGAATTGTGGCGAGCCTACAATGTATCATTGTTTCATAGGACTTACTTCTTTCTTTTGTTTAGAGGTGATCCAACTGACTCCATTTACATGGGGGTGGAGCTTAGAAGATTATCTTTCCTCAAAGAAACATTTGCCTGTGGAAATCAGTCCATGAACGACACTCACACCTCACATTAG

Predicted protein sequences of Glyma04g24285

Limit To All Plant Sequences

>Glyma04g24285.1   sequence type=predicted peptide   gene model=Glyma04g24285   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRTPASSFKKCFPRRPDGLQRKFLPLTYGSSTKFPMNGSPSSIGSPFMDELRTNNMRSYANEDVSSLQTFVAGMKEMDQQAETTTFRFENNMKDVGVGSMLEAPESPVEWPMQFKQQQTEIVELWRAYNVSLFHRTYFFLLFRGDPTDSIYMGVELRRLSFLKETFACGNQSMNDTHTSH*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain