Glyma04g24070 - SoyBase

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Report for Sequence Feature Glyma04g24070

Feature Type:	gene_model
Chromosome:	Gm04
Start:	27650453
stop:	27659202
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g24070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57860	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein \| chr5:23437991-23439087 FORWARD LENGTH=95	SoyBase	E_val: 7.00E-45	ISS
GO:0006289	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4495	KOG	RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B	JGI		ISS
PTHR10666	Panther	UBIQUITIN	JGI		ISS
PTHR10666:SF55	Panther	UBIQUITIN FAMILY PROTEIN	JGI		ISS
PF00240	PFAM	Ubiquitin family	JGI		ISS
UniRef100_C6SXT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXT9_SOYBN	SoyBase	E_val: 2.00E-68	ISS
UniRef100_Q8VWY0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-like protein n=1 Tax=Cucumis sativus RepID=Q8VWY0_CUCSA	SoyBase	E_val: 3.00E-44	ISS

Expression Patterns of Glyma04g24070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g24070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g155300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g24070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g24070

Limit To All Plant Sequences

>Glyma04g24070.4   sequence type=transcript   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACCCCTGCTAGTTGCAACAGAAAAATAAACCGAGCCAAGCGCGTTAAAAAGTGAATGCGACAGGACACGTAAACACCAATTAATCACGATTAGTGAGGGAGTGAGAATCCCTCTTCCAAATCTGACACTACAAAATATTCACCAATTCCCAGTTCCGTGGACTGCAGCACCCTTAGATTTCGTTACCAAGGAGAAGGAGAAGCGCCCGAAGCGCAATAAAATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAAAGCCATACTCCAACAATGGCTGGCTCACAATTAATGGTACCCTGCCCATGGAATCATTGATAAATATTATTTTAAAACCTTAAATGAAACTTCCATGTTATGAGCTAAGGGTACTGTCCCGTTAATTTTTCAGGTGGTATGATGAAATCCATAGTGGCTCAGAAAACATTTTCAAACGATTGATGAAATGACATGCTTGTTTGTATAATACTGAATTTATTGCCTTAAGAGAATATGACACTTTCTTTTCTTTGGTAAAATGAAGAATTAAGGGAGGCAAGTTACATCACTATCAAAGTGCCTGTCCACTGGTGTGCATAAGTGCAATGATTTTATATCATGTTAAATCAAATTTGTTTAAGGTCTAGATTTAGATTGGCTTTATACCAATGTGGGTTAAATATATTTTTAATAATTGCAAATAGGACAAAATTTGTTTTGTCCTTCAAAATTG

>Glyma04g24070.5   sequence type=transcript   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACCCCTGCTAGTTGCAACAGAAAAATAAACCGAGCCAAGCGCGTTAAAAAGTGAATGCGACAGGACACGTAAACACCAATTAATCACGATTAGTGAGGGAGTGAGAATCCCTCTTCCAAATCTGACACTACAAAATATTCACCAATTCCCAGTTCCGTGGACTGCAGCACCCTTAGATTTCGTTACCAAGGAGAAGGAGAAGCGCCCGAAGCGCAATAAAATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAAAGCCATACTCCAACAATGGCTGGCTCACAATTAATGGTGGTATGATGAAATCCATAGTGGCTCAGAAAACATTTTCAAACGATTGATGAAATGACATGCTTGTTTGTATAATACTGAATTTATTGCCTTAAGAGAATATGACACTTTCTTTTCTTTGGTAAAATGAAGAATTAAGGGAGGCAAGTTACATCACTATCAAAGTGCCTGTCCACTGGTGTGCATAAGTGCAATGATTTTATATCATGTTAAATCAAATTTGTTTAAGGTCTAGATTTAGATTGGCTTTATACCAATGTGGGTTAAATATATTTTTAATAATTGCAAATAGGACAAAATTTGTTTTGTCCTTCAAAATTG

Coding sequences of Glyma04g24070

Limit To All Plant Sequences

>Glyma04g24070.1   sequence type=CDS   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAA

>Glyma04g24070.4   sequence type=CDS   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAA

>Glyma04g24070.5   sequence type=CDS   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACCTACTTCATCAGGTGCAAGCCATCTGATAAAATTCTTGACATAAAACAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTAATTCTACCTGTTACTGGAGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTCGTTGCACTGACCTTGAGAAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCTCGGGATGCGGATGGTGCCAATTGGTAA

Predicted protein sequences of Glyma04g24070

Limit To All Plant Sequences

>Glyma04g24070.1   sequence type=predicted peptide   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMYIRVKRSKTTYFIRCKPSDKILDIKQKLQELVDQPANNQRLILPVTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW*

>Glyma04g24070.4   sequence type=predicted peptide   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMYIRVKRSKTTYFIRCKPSDKILDIKQKLQELVDQPANNQRLILPVTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW*

>Glyma04g24070.5   sequence type=predicted peptide   gene model=Glyma04g24070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMYIRVKRSKTTYFIRCKPSDKILDIKQKLQELVDQPANNQRLILPVTGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGANW*

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