SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30720 | AT | Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein | chr4:14972212-14975461 REVERSE LENGTH=707 | SoyBase | E_val: 0 | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| PTHR10617 | Panther | FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE | JGI | ISS | |
| PTHR10617:SF52 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00070 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| PF07992 | PFAM | Pyridine nucleotide-disulphide oxidoreductase | JGI | ISS | |
| UniRef100_F4JQE2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FAD/NAD(P)-binding oxidoreductase-like protein n=2 Tax=Arabidopsis thaliana RepID=F4JQE2_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KJ51 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KJ51_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g24054 not represented in the dataset |
Glyma04g24054 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g155100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g24054.1 sequence type=CDS gene model=Glyma04g24054 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGACCATAAGGAATGTCATTTTTGTAAAAGATATCCCCACAAAACGTTACGAGATCAATTTAGCCTATGCTACAAGAATTAAAGGTAGTGGCAAGCTAACACGGCAAATCCGGTGTGCGAAGAGAACCGGAAAACAGAGGTACCCGTCGGAGAAGAAGAGGCTGAGGACAAAGCAGAAAGAGCTCTTATCAGATTCCAAGGAGAAGAGCAAGTTTGAGGGCACATGGAGGCTCTTCAAGCTCGCCGTTCCATTCGATCAACACCCTGGCAAAGATTCTCTCCATGTCTCCGATGCCCTTCTACAACAAATCGCCACAGTTCTCAAGTTCCCGGTTGCTTCGCTGTTGCCACCGGAGGCTTTCACCATCGTTAGGAAGTCCTTTGATGCTAGGAAGAAATTAAAAGAATCCAAATTTGTGCATTTTCCAACAGTGCATACTGTGGACATGGATGTCCAAAAACTCATCAGTCTGGAGCCTCGTTGTTGGGACTTTATTTCTCGGCTGGAGCCTAAAGTTGGCCTTGTGGAACGTGTGCATGATGAAAGAGATTTTGGTGATCTGGCGAGTATCATTCACGACTGTAAAGAAAATAAAGAAGTTGCATTGAAAGGGGGAAATGGACATAGCATTTTCTCAACAGAGTTGTGCAAGAACCAGGCTACGAGAAAACCAAAAATTGCAGTAGTGGGAAGTGGGCCCTCTGGCCTATTTGCTGCTCTTGTTCTTGCAGAGCTTGGTGCAGATATTACTCTGATAGAAAGAGGTCAACCAGTAGAAAAAAGGGGGCGTGATATTGGTGCTCTTGTAGTTCGTCGAATTTTAGATTTGGAAAGTAACTTCTGCTTTGGAGAGGACTTATGTGTGGCAGGGTGGTGCAGTGCAGGTACCTGGAGTGATGGGAAGTTGGTGACCAGAATTGGACGCAACAGTGGCAGTGTCCTTGCAGTTATGAGAACTCTAGTGCATTTTGGAGCTCCAAAACAGATATTGATTGATGGAAAGCCTCACTTAGGAACAGATAGGTTGGTTCCTTTACTTCGCAACGTTAGGCAACATCTGCAAGATTTGGGTGTCACCATAAAGTTTGGGACAAAAGTAGATGATTTAGTTATAAAAGATAGACATGTTCTGGGGGTTATGGTATCTGAGTCAGCTGATAAATTACATTTAACAAGTCAGAAGATGGAATATGATGCAGTTATTCTGGCTGTTGGTCATTCTGCTCGTTATATATATGAAGTGCTTCTTGCTCACAATGTGGAATTAATACCCAAAGATTTTACTGTAGGGCTACGAATTGAGCATCCTCAAGAACTAATAAACAGCATACAAAGCTTTTTGTTTGTAATAAAAGCAATTTCTCAGACATATTTATCTATTTGTCATGGTTATGATTATGCTGAATTGGCTTCCGAGGTTTGTCATGGACGTGGTAAAATTCCAGTGGCAGATTACAAAGTTGCCAATTATATTGACAAGGAGGATTTCAATGACGTATCTGATTCAGGGGTAACAAATCGTAGTTGCTACTCTTTCTGCATGTGTCCAGGTGGGCAGGTTGTTCTCACTAGTACAAGTCCATCAGAAATATGCATCAATGGCATGTCATTTTCTCGGCGAGCATCTAAGTGGGCAAATGCCGCACTTGTGGTGACAGTCACAACAAAGGATTTCGAAGCTTTGAATTATTATGGTCCTCTTGCTGGGGTCAAATTTCAGAGAGTGTTCGAACAAAGAGCTGCTATGATGGGAGGAGGAAATTTTATAGTGCCTGTCCAGACAGTTACAGATTTTCTTGAGAACAAGTTGTCAGTAACATCTGTACCCCCGTCAAGTTATCGATTGGGTGTGAAGGCAGCAAACCTCCATCAATTATTTCCCATTCATGTAACTGAAGCTTTGAAACATTCACTTGTAACATTTGACAAGGAGTTACCAGGATTTATCTGCAATGATGCTCTCCTTCATGGTGTAGAGACTAGGACTAGTTCCCCAATCCAAATTCCACGCAATGGTGACTCTTATGAATGCACTTCGGTAAAAGGACTATATCCAGTTGGTGAAGGAGCAGGCTATGCTGGAGGGATCATTAGTGCAGCAGTAGATGGAATGCATGCTGGTTTTGCTGTGGCAAAAAAATTCAGCTTGTTTCATGGAGATGTTGAGTCTGTTCTGGGCAAGGCTCAAAATGTTGGAGTTGTCAAGTACTAG
>Glyma04g24054.1 sequence type=predicted peptide gene model=Glyma04g24054 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high QTIRNVIFVKDIPTKRYEINLAYATRIKGSGKLTRQIRCAKRTGKQRYPSEKKRLRTKQKELLSDSKEKSKFEGTWRLFKLAVPFDQHPGKDSLHVSDALLQQIATVLKFPVASLLPPEAFTIVRKSFDARKKLKESKFVHFPTVHTVDMDVQKLISLEPRCWDFISRLEPKVGLVERVHDERDFGDLASIIHDCKENKEVALKGGNGHSIFSTELCKNQATRKPKIAVVGSGPSGLFAALVLAELGADITLIERGQPVEKRGRDIGALVVRRILDLESNFCFGEDLCVAGWCSAGTWSDGKLVTRIGRNSGSVLAVMRTLVHFGAPKQILIDGKPHLGTDRLVPLLRNVRQHLQDLGVTIKFGTKVDDLVIKDRHVLGVMVSESADKLHLTSQKMEYDAVILAVGHSARYIYEVLLAHNVELIPKDFTVGLRIEHPQELINSIQSFLFVIKAISQTYLSICHGYDYAELASEVCHGRGKIPVADYKVANYIDKEDFNDVSDSGVTNRSCYSFCMCPGGQVVLTSTSPSEICINGMSFSRRASKWANAALVVTVTTKDFEALNYYGPLAGVKFQRVFEQRAAMMGGGNFIVPVQTVTDFLENKLSVTSVPPSSYRLGVKAANLHQLFPIHVTEALKHSLVTFDKELPGFICNDALLHGVETRTSSPIQIPRNGDSYECTSVKGLYPVGEGAGYAGGIISAAVDGMHAGFAVAKKFSLFHGDVESVLGKAQNVGVVKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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