Glyma04g24040 - SoyBase

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Report for Sequence Feature Glyma04g24040

Feature Type:	gene_model
Chromosome:	Gm04
Start:	27518179
stop:	27530375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g24040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30710	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF566) \| chr4:14965538-14967881 REVERSE LENGTH=644	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PF04484	PFAM	Family of unknown function (DUF566)	JGI		ISS
UniRef100_UPI0002339526	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339526 related cluster n=1 Tax=unknown RepID=UPI0002339526	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g24040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g24040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g155000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g24040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g24040

Limit To All Plant Sequences

>Glyma04g24040.1   sequence type=CDS   gene model=Glyma04g24040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTATGTGAATCAGGGAAGAACAAAGCTCCAGAGACCCCAAGAGTAAGACCACCCTCGGTTCTGGCAGAAAAGAACAATGCAGAAAAGACCACCAGACGCTCAAGAACAAGGGAAATTAGTTCTAGATACAAATCCCCTACTCCTGCTAGCCCTTCTGCTCCTCGTAGATGCCCTTCACCAAACCTTACAAGAACAACGCCTGCGTCATCCTCTCACTTGTTTCCAAAGAGGTCTCTCTCCACAGAAAGGAAGAGGCCCTCAACTCCGACTTCCCCAACGCCACAAAGACCTTCTACGCCTGTATCTGTTGATGGGAAATTGTCATCCAGAAGACTATCGGGTACCCGTTTGCCGGACAGTCTATGGCCTTCCACTATGCGAAGTCTGAGTGTTTCTTTCCAGTCAGATACCATTTCCATACCTGTTAGCAAGAAAGAGAAGCCCGTTGTTAGTGCTTCAGACCGCACTCTGCGCCCGGCTTCAAATGTGGCACACAAGCAGCCTGAAACTCCAACCATAAGAAAGCCTACGCCAGAGAGAAAGAAAAGTCCCCTTAAAGGGAAGAATGCTTCTGATCAGTCTGAGAATTCAAAACCACTTGATAGCTTGTCTTCTCGGTTAATAGATCAGCATCGGTGGCCAAATAGAATAGGTGGGAAGGTATCTTCTAATGCATTAAACAGAAGTGTTGATTGTGCTGATATCAGAACGTTGAACACTTCAGTTCCGGGAACTGGTGTTTCTTCACTGAGAAGATTGTCATTGTCTATATCAGGTGAATCCAGTAAACCCTTCCAAAGGGCTTCTAATGACGCTGTAAGGCTATTGTCGCTTGTTGGAAGTGGCAGAATAGGAAGTGAGGTGAAATCAGTTGATGACTGTTTGCCACAAGAACTAAGACCTCACAAATCTTTTGCTGCAACTCCAACCGATAAAGCAGGACTTGCATTTGCTGGAGTCAGATCTCAGTCCTTGTTTGCTCCTGGATCACGACTGCCCTCACCTAGTAGGACCTCAGTGCTATCCTCTTCTAGTTCAAGAGGTGTCAGTCCATCTAGGTCAAGACCATCAACTCCTCCTTCTAGGGGGGTTAGTCCATCTCGAATTAGACCAACCAATTCATCCATTCAATCAAACAATTCAATTTCAGTGCTCAGCTTTATTGCTGATTTTAAAAAAGGGAAAAAGGGTGCAGCCTACATAGAAGATGCTCACCAATTACGTCTTCTCTACAACAGATACTTGCAATGGAGGTTTGTCAATGCAAGAGCTGAGGCTGTACTTTATATCCAAAATGCAATTGTGGAGAAAACTCTATATAATGTATGGATTACTACTTTGTCCCTGTGGGAGTCTGTTATTAGGAAGAGGATCAATCTTCAGCAGCTGAAGCTCGAACTTAAGCTGAACTCTGTTATGAATGATCAAATGACTTACCTTGATGATTGGGCTGTACTTGAAAGAGATCATATTGATGCTGTATCTAAGGCTGTGGAAGACTTGGAGGCCAGCACTCTTCGTCTTCCTGTAACTGGAGGAGCAATGTCAGATATTGAGCATTTGAAGGTTGCTATCTGTCAAGCTGTTGATGTTATGCAAGCAATGGCATCTGCAATCTGCTCTTTGCTCTCGCAGGTTGAGGGCATGAACAATTTAATTTCTGAAGTTGCTGCCATAGCAGTGCAAGAAAAGACCATGCTTGATGAATGTGAAATGCTACTGGCTTCAGTAGCAGCTATGCAGGTTGAGGAAAGTAGCCTTCGGACGCATCTTATGCAAATCATGCAAGCTTTGGGGATGAGCAAGTAA

Predicted protein sequences of Glyma04g24040

Limit To All Plant Sequences

>Glyma04g24040.1   sequence type=predicted peptide   gene model=Glyma04g24040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVCESGKNKAPETPRVRPPSVLAEKNNAEKTTRRSRTREISSRYKSPTPASPSAPRRCPSPNLTRTTPASSSHLFPKRSLSTERKRPSTPTSPTPQRPSTPVSVDGKLSSRRLSGTRLPDSLWPSTMRSLSVSFQSDTISIPVSKKEKPVVSASDRTLRPASNVAHKQPETPTIRKPTPERKKSPLKGKNASDQSENSKPLDSLSSRLIDQHRWPNRIGGKVSSNALNRSVDCADIRTLNTSVPGTGVSSLRRLSLSISGESSKPFQRASNDAVRLLSLVGSGRIGSEVKSVDDCLPQELRPHKSFAATPTDKAGLAFAGVRSQSLFAPGSRLPSPSRTSVLSSSSSRGVSPSRSRPSTPPSRGVSPSRIRPTNSSIQSNNSISVLSFIADFKKGKKGAAYIEDAHQLRLLYNRYLQWRFVNARAEAVLYIQNAIVEKTLYNVWITTLSLWESVIRKRINLQQLKLELKLNSVMNDQMTYLDDWAVLERDHIDAVSKAVEDLEASTLRLPVTGGAMSDIEHLKVAICQAVDVMQAMASAICSLLSQVEGMNNLISEVAAIAVQEKTMLDECEMLLASVAAMQVEESSLRTHLMQIMQALGMSK*

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