SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19570 | AT | Annotation by Michelle Graham. TAIR10: cytidine deaminase 1 | chr2:8470598-8471503 REVERSE LENGTH=301 | SoyBase | E_val: 3.00E-51 | ISS |
| GO:0009972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytidine deamination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004126 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cytidine deaminase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| PTHR11644 | Panther | CYTIDINE DEAMINASE | JGI | ISS | |
| PTHR11644:SF5 | Panther | CYTIDINE DEAMINASE 1, 2, 7, 8 | JGI | ISS | |
| PF00383 | PFAM | Cytidine and deoxycytidylate deaminase zinc-binding region | JGI | ISS | |
| UniRef100_G7LJJ4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytidine deaminase n=1 Tax=Medicago truncatula RepID=G7LJJ4_MEDTR | SoyBase | E_val: 1.00E-60 | ISS |
| UniRef100_UPI000233EE04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EE04 related cluster n=1 Tax=unknown RepID=UPI000233EE04 | SoyBase | E_val: 4.00E-100 | ISS |
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Glyma04g23996 not represented in the dataset |
Glyma04g23996 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g154700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g23996.1 sequence type=CDS gene model=Glyma04g23996 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGGATGATGCCGCAACCACAACAATGATAGCAGCCGCAATAGCCGATGGAGTCACAATCGCCGAATCCCAATCAATCTCCAAACTCCTCCCTTCCCTCGTTTCCTCTGCTCAATCCCTCGCCTGTCCTTCCATCTCCAACTTTCCCGTCGCCGCCGTCGAACTCGGCACCTCCGGTCACATCTTCGTGGGCGTGAACATGGAGTTCCCAAGCCTCCCCTTCCACCACACCATCCACGCTGAACAGTTCCTCCTCACCAACATGGCCAACAACGTCGAGACCCACCTCGACTCCTTCGCCGTCTCCGCCGCCCCCTGCGGCCATTGCCGCCAGTTCCTTCAAGAACTCCGCGACGCCCCTGACATCCAAATCCTCATCACCTCCCATAAAAACCCTCACTTCAGCCCTCTCTCCCACTTCCTCTTCCACCACTTCGGCCCCCACGACCTTTTCCCCAAAACCGTCCCTCTCCTCTTGGAGCCTCGTCACAACGCTCTCTCTCTTCCCCAAAATGATCATTTCAACGTTCTTGCAAAAGAATTTGAAATTCTTTCATAA
>Glyma04g23996.1 sequence type=predicted peptide gene model=Glyma04g23996 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQDDAATTTMIAAAIADGVTIAESQSISKLLPSLVSSAQSLACPSISNFPVAAVELGTSGHIFVGVNMEFPSLPFHHTIHAEQFLLTNMANNVETHLDSFAVSAAPCGHCRQFLQELRDAPDIQILITSHKNPHFSPLSHFLFHHFGPHDLFPKTVPLLLEPRHNALSLPQNDHFNVLAKEFEILS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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