Glyma04g23780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g23780

Feature Type:	gene_model
Chromosome:	Gm04
Start:	27217505
stop:	27222402
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g23780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15340	AT	Annotation by Michelle Graham. TAIR10: methyl-CPG-binding domain 10 \| chr1:5275895-5277474 REVERSE LENGTH=384	SoyBase	E_val: 8.00E-43	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008327	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyl-CpG binding	SoyBase	N/A	ISS
PF01429	PFAM	Methyl-CpG binding domain	JGI		ISS
UniRef100_G7JE44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methyl binding domain protein n=1 Tax=Medicago truncatula RepID=G7JE44_MEDTR	SoyBase	E_val: 9.00E-74	ISS
UniRef100_I1JWB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g23780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g23780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g154300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g23780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g23780

Limit To All Plant Sequences

>Glyma04g23780.1   sequence type=CDS   gene model=Glyma04g23780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCTCAGTGGAGAAGGAGGGTGGCGCGAGCGAGGAAACTTTCTCTGTGGAGCTTCCTGCTCCACCTGGTTGGAAGAAGCTGTTCATCCCAAAGAAAGCTGGTACCCCAAAGAAAAACGAGATTGTGTTCACTGCACCAACAGGAGAGGAGATCAATAACAGGAAGCAGCTGGAAAAATATTTGAAAGCACACCCTGGTGGTCCAGCTGTATCAGAATTTGACTGGGGCACTGGTGAGACCCCAAGAAGATCTACAAGAATCAGTGAGAAGGCAAAAGCAGCTCCTCCAATAGAAAGCGAGCCCCCAAAGAAACGTACTAAAAGATCATCAGCTTCACAAAAGGAAACTTCCCAGGAAGAAAAAGAAGAGAAGACAAAGGAAGCGGAAATGCAAGAAGCTGATTACACCACTAAGGATGATAATGATATAGAGAAGGAAAAGGATGTTGTAATGGAAAATCAAGATGTCAAGAGTGTGGAAGATACAGATGTCAACAAATCCACTCATTCTGGAGAAGCTAAAGCTGGAGAAAATGTTGAGGTACCTATTGAAAAGGACAAAGGAATTGAGGTCTCTGAAGTTTTTCTGAGAAAGGATGAAGAAAAGATTGAGCAACCACAGGAAGAGACAAAAGAATATCGTGGATCTGGGGAGCCAGAGAAATTGGAAACATGCACTATTGCTGACAAAAAGGTTGAAGTGGAAGGAGTGAATAAAGAGGAAAACATCAAAAGTACTCGTGAATTTGAAGCTGAGGAAATAGAAGGAACAAAAGTGAATAGTGAAGAATATCACAAGCTTGATGAGATAAACAAGGCTGAAGCAGAGTTGACCATGAATGGCAATCATGGGAGCTGA

Predicted protein sequences of Glyma04g23780

Limit To All Plant Sequences

>Glyma04g23780.1   sequence type=predicted peptide   gene model=Glyma04g23780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSVEKEGGASEETFSVELPAPPGWKKLFIPKKAGTPKKNEIVFTAPTGEEINNRKQLEKYLKAHPGGPAVSEFDWGTGETPRRSTRISEKAKAAPPIESEPPKKRTKRSSASQKETSQEEKEEKTKEAEMQEADYTTKDDNDIEKEKDVVMENQDVKSVEDTDVNKSTHSGEAKAGENVEVPIEKDKGIEVSEVFLRKDEEKIEQPQEETKEYRGSGEPEKLETCTIADKKVEVEGVNKEENIKSTREFEAEEIEGTKVNSEEYHKLDEINKAEAELTMNGNHGS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain