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Report for Sequence Feature Glyma04g23760

Feature Type:gene_model
Chromosome:Gm04
Start:27192306
stop:27195532
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g23760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13460AT Annotation by Michelle Graham. TAIR10: IQ-domain 11 | chr5:4316323-4318247 FORWARD LENGTH=443 SoyBaseE_val: 2.00E-92ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PTHR13140Panther MYOSIN JGI ISS
PTHR13140:SF198Panther JGI ISS
PF00612PFAM IQ calmodulin-binding motif JGI ISS
UniRef100_G7ZWB7UniRef Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZWB7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339522UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339522 related cluster n=1 Tax=unknown RepID=UPI0002339522 SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g23760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g23760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g154200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g23760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g23760
>Glyma04g23760.1   sequence type=CDS   gene model=Glyma04g23760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTAAGAAGCTTTTTTTATGGGATACACATTCCTCGCAAGAGAAGGAGAAAAGAAGGGCTTGGATATTTGGGAGAGTTAAGACCAAGAGATTGCCTTCAATTACAGCTCCACCACCACCTTCAAAAGAAACAAGACTAAGTGAAGTTGAGGAAGAACACAGCAAGCATGCTTTAACAGTGGCCATTGCTTCAGCTGCTGCTGCTGAAGCTGCTATTACTGCTGCTCAAGTTGCTGTTGAGGTTGTTAAGCTCCAATCTGCTGCTCATCAACAACTTAAAGAAAAACAAGAACAACTTCAACCTGTTAAAACTAGCCATGATGTTCCTCATTCCACACACCAATGCCAGAGGAAGATTCAAGAATCTTCAGCCATCAAAATTCAAATAGCATTTAGAGGTTACCTAGCAAGGAAAGCTTCGAGAGCATTGAAGGGAATAGTTAAGCTTCAAGCTATCATTCGTGGAAGAGCTGTGAGACGCCAAGCTTTGAATACTCTAAAGTGCTTGGAGTCAATAGTAAGTATCCAGTCACAGGTCTTTGCAAGGAAACTCCAAATGGTTGAAGGAAGATGGGATTGTGGTGAACATGAAGAGATGCAAGGTTCAAGAGACAAGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGGATGACAGCATTTTGTTGAAGGAAGAGGTAAAAGCCTCTTGCATAAGCAAGAAAGAAGCAGTTCTTAAGAGAGAGAAAGTAAAAGAATACTCATTTAACCACAGAAGGTCAGCTGAATCAGAAAGAAATAAAATAAATGGAAGATGGAGATACTGGATGGAGCAGTGGGTAGACACACAACTTTCTAAGGGTAAAGAACTTGAAGATTTAGACTCAGTTTTCAGCTCACATTATTCTAGACCAGGGGAGGAATGTGAAAGGAGTCAACTAAAGCTTAGAAATGTTCATAGACAAAATCAGGTTGAAGCATTCGATTCTCCACCACTTGCTTCAAGGAACTCTTTTCCCCACAGGAGCCAAACTTCAGAGGCAGAAGATCACTCAGTTCCAAGCTCTCCTGCAATTCCTACATACATGGCTGCAACAAAATCAACACAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGATAGGAGGGAGTTTTGACATCAACTCTGATAGCTATTCACTATGCAAGAAAAAGTTGCCTATTGTGACTTCTATTAATGGTGAAGTGTTTAGTAATGGTAGGATGGGCAAACTCAGTAGTAATCAGCAAAGATCTCCTAGCTTAAAGGGCCTTCCAAGTCCTGTAAAATTGAGTCAGACATTGAGGGATCTCAGCATTAATTCAGATTGCTCAGTGCCAATTTGA
Predicted protein sequences of Glyma04g23760
>Glyma04g23760.1   sequence type=predicted peptide   gene model=Glyma04g23760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKKLFLWDTHSSQEKEKRRAWIFGRVKTKRLPSITAPPPPSKETRLSEVEEEHSKHALTVAIASAAAAEAAITAAQVAVEVVKLQSAAHQQLKEKQEQLQPVKTSHDVPHSTHQCQRKIQESSAIKIQIAFRGYLARKASRALKGIVKLQAIIRGRAVRRQALNTLKCLESIVSIQSQVFARKLQMVEGRWDCGEHEEMQGSRDKIIRMDSNSERRWDDSILLKEEVKASCISKKEAVLKREKVKEYSFNHRRSAESERNKINGRWRYWMEQWVDTQLSKGKELEDLDSVFSSHYSRPGEECERSQLKLRNVHRQNQVEAFDSPPLASRNSFPHRSQTSEAEDHSVPSSPAIPTYMAATKSTQAKARSTSSPRARIGGSFDINSDSYSLCKKKLPIVTSINGEVFSNGRMGKLSSNQQRSPSLKGLPSPVKLSQTLRDLSINSDCSVPI*






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