Glyma04g23560 - SoyBase

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Report for Sequence Feature Glyma04g23560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	26786660
stop:	26794035
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g23560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57870	AT	Annotation by Michelle Graham. TAIR10: MIF4G domain-containing protein / MA3 domain-containing protein \| chr5:23439755-23443433 FORWARD LENGTH=776	SoyBase	E_val: 0	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0016070	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG0401	KOG	Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)	JGI		ISS
PTHR23253	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA	JGI		ISS
PTHR23253:SF2	Panther	EUKARYOTIC INITIATION FACTOR 4F-RELATED	JGI		ISS
PF02847	PFAM	MA3 domain	JGI		ISS
PF02854	PFAM	MIF4G domain	JGI		ISS
UniRef100_G7JFK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic initiation factor iso-4F subunit p82-34 n=1 Tax=Medicago truncatula RepID=G7JFK4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JWB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JWB5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g23560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g23560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g154100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g23560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g23560

Limit To All Plant Sequences

>Glyma04g23560.2   sequence type=transcript   gene model=Glyma04g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAACGCTGAAACAGTTTTTCCGGAGCTGCCTATGACTATGCGACGAACTAAATGATTCTGTTGCGTTGTCAGTATATTTGTTTCTAATGAATGAGTAGTTGAAAAGGGAAACATTTTGTCTTGGCCAAATGTTACTAGACATGGTGGTATATTATTGAGTTGTGTATGGTTCATGTATAACTATTTCTATCGCTATATTTTTGTAAAGGATTTTAGTGGAAAATAATTGTGATTTTTTCTGTGATGTCTATTGTTGCATACTATTGTATATGTCTACTTCATTTTTCTTGTTCTTTTGAGGTATTTATTGGTTGTGTGGTGATGGTTTAAGTAAGGACCTTTTGTAGATATTTGTATCTTATTGGTTCTTGTTTTATAGACCAGAGATTCACGGTTTGAGGGTCATGAGCGTGTGCGATATAGCAGAGATCAGCTTTTACAGCTTCAAGAGGCTGTTGAGGTCCCTGATGATATACTAAAGATTAAACAAGATATAGAAGCTGAAATTTTTGGTGAAAATCCAAGTTGGGGCCGTGCTGAAAGCAATCTTCCTCATCAATTACAAAATCGGTATTCTGAGCCAGATAACCGTGATTGGCGTGGTCATTCTGGACAACTTCCTGCTAATTCAGATGAGAGGTCTTGGGAAAACCTCAGAGATAACAGGGAGTTTGGTAATAGACAGCAGGATGCTAGTCAGGTTAATCGTCATGACCAACTTAATTCCCAGTTTGCTAGAACACAAATCTCTTCTATGCAAGGGGGAGGACCTACTCCTACGCTGGTCAAGGCCGAGGTTCCGTGGTCTGCTAGAAGGGGAAGTCTATCTGAAAAGGATCGCGTCATAAAAACTGTGAAAGGAATACTGAATAAGTTGACTCCTGAAAAATTTGATATCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGACATCTTAAAGGATGTCATTTCACTTATTTTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGCTCTGTTCTGATCTAAATGAAAAGTTGCCTCCATTCCCATCTGAAGACCCTGGTGGGAAAGAAATCACCTTTAAGAGAGTGCTCTTGAATAATTGCCAGGAGGCATTTGAAGGTGCTGAAAATCTGAGGGAGGAACTAAAAAGGATGACTGCCCCTGAGCAGGAGATGGAGCGTATGGACAAGGAAAGGCTGCTCAAGCTTCGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCATGTTTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATTGGCAAGCAGCTTGATGAAAGTCTTAAATCGCGGCGTATAAATGACGTTTACTTTAGCCGATTGAAAGAATTAAGCTCAAACCTACAACTTGTACCCCGACTTAGGTTCATGATTCGGGATGTTATAGAGTTGCGTGCTAGTAACTGGGTTCCTAGACGCGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGATTGCGGCCAGGTGCAACTGCAAGTATGAGAAATCCCCGTGGTGGTGTTCAAGGAAATGCCAGCTCTGGGGGTTTTCCTATTGCCCGACCTGGTGCAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGATTTGATAATGGCAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGATTTGCCAGGTGTTCAAGCTGCTGGACAGAGCAACTCTGCTTTACTTTCCAAGTCCACGACCCTCAATTCAAAACTGCTACCTCAAGGTAGTGGTGGTATTATAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTACAAACTTTGGTTTAGGACCTGAGGCAGCACCTCAACTCTCTTCACCTGCTAAAACAGCCACTCCTGTTCCTGTATCCTCTGAGAAGCCACAACATCCAGCTGCAAGATTGAATACTGATAATCTTCGCTGCAGAACTGTCTCTCTTCTAGAAGAATATTTCAGTGTTCAGCTTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACCCCTATAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTACTGGATGATATTGGTATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGAAAACTAATTTTGGCTGGGGGATTGGATTGTAAGCTGGTGAGAGAGATTCTCAAGAAGGTGGATGATGGCATGTTCCAGAGAGCAATATTTGACAGTGTGGTGGGGGCCATTAGATCTGCATCTGGGCAAGCCGTGTTGGATGCTCAAACATCTGATATTGAGGCCTGCCAGAGTATGCTCAAGTGAATCAAAATTTCTGTAACTGGACGAACCTGTCTTCCTTTGCTACCTTAAATTTCCATACCTTCATCCTCACTTTTTGAGTAAAAGCATTTTGTATTGATGTTATAAAGTGGAGATTCTAGTTTCAGCTATTTTTCTAAAGCTGTAAAATTTTATTTTTGATTTTTTGAGATCTTAGAGATGTTTTTTGAGGGAAAAGTCAAACCATAAAGCTATGGATTTTATTTTCTTGTTAGCTAATCAGGTGCCATGTTTCTCCGAAGGTGTCCCATTAGGGGTCCAATGTTTTTGTATTTCATTAGTCTCAATTTACTTATTTTTGTTGACATAGTAATTGTTTAACTTGTCAGTTCATAAATAACATTATCGTTATATGCTCATGCTCTTGTTCCCGTTTGAAGATTTATTTTGCCAGAT

Coding sequences of Glyma04g23560

Limit To All Plant Sequences

>Glyma04g23560.1   sequence type=CDS   gene model=Glyma04g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAAGGTGATCCAACGGTCCTAAGCTTGAGGCCTGGTGGTGGTCGTGGCGGCGGAAGCAGGCTTTTCGGTCACTCCTCCTCCTCTCTCTCCGCCGATCTCCCTCTCTGCCGCCCTCATGCCTATTTCTCTCTCAAGACCAGAGATTCACGGTTTGAGGGTCATGAGCGTGTGCGATATAGCAGAGATCAGCTTTTACAGCTTCAAGAGGCTGTTGAGGTCCCTGATGATATACTAAAGATTAAACAAGATATAGAAGCTGAAATTTTTGGTGAAAATCCAAGTTGGGGCCGTGCTGAAAGCAATCTTCCTCATCAATTACAAAATCGGTATTCTGAGCCAGATAACCGTGATTGGCGTGGTCATTCTGGACAACTTCCTGCTAATTCAGATGAGAGGTCTTGGGAAAACCTCAGAGATAACAGGGAGTTTGGTAATAGACAGCAGGATGCTAGTCAGGTTAATCGTCATGACCAACTTAATTCCCAGTTTGCTAGAACACAAATCTCTTCTATGCAAGGGGGAGGACCTACTCCTACGCTGGTCAAGGCCGAGGTTCCGTGGTCTGCTAGAAGGGGAAGTCTATCTGAAAAGGATCGCGTCATAAAAACTGTGAAAGGAATACTGAATAAGTTGACTCCTGAAAAATTTGATATCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGACATCTTAAAGGATGTCATTTCACTTATTTTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGCTCTGTTCTGATCTAAATGAAAAGTTGCCTCCATTCCCATCTGAAGACCCTGGTGGGAAAGAAATCACCTTTAAGAGAGTGCTCTTGAATAATTGCCAGGAGGCATTTGAAGGTGCTGAAAATCTGAGGGAGGAACTAAAAAGGATGACTGCCCCTGAGCAGGAGATGGAGCGTATGGACAAGGAAAGGCTGCTCAAGCTTCGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCATGTTTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATTGGCAAGCAGCTTGATGAAAGTCTTAAATCGCGGCGTATAAATGACGTTTACTTTAGCCGATTGAAAGAATTAAGCTCAAACCTACAACTTGTACCCCGACTTAGGTTCATGATTCGGGATGTTATAGAGTTGCGTGCTAGTAACTGGGTTCCTAGACGCGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGATTGCGGCCAGGTGCAACTGCAAGTATGAGAAATCCCCGTGGTGGTGTTCAAGGAAATGCCAGCTCTGGGGGTTTTCCTATTGCCCGACCTGGTGCAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGATTTGATAATGGCAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGATTTGCCAGGTGTTCAAGCTGCTGGACAGAGCAACTCTGCTTTACTTTCCAAGTCCACGACCCTCAATTCAAAACTGCTACCTCAAGGTAGTGGTGGTATTATAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTACAAACTTTGGTTTAGGACCTGAGGCAGCACCTCAACTCTCTTCACCTGCTAAAACAGCCACTCCTGTTCCTGTATCCTCTGAGAAGCCACAACATCCAGCTGCAAGATTGAATACTGATAATCTTCGCTGCAGAACTGTCTCTCTTCTAGAAGAATATTTCAGTGTTCAGCTTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACCCCTATAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTACTGGATGATATTGGTATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGAAAACTAATTTTGGCTGGGGGATTGGATTGTAAGCTGGTGAGAGAGATTCTCAAGAAGGTGGATGATGGCATGTTCCAGAGAGCAATATTTGACAGTGTGGTGGGGGCCATTAGATCTGCATCTGGGCAAGCCGTGTTGGATGCTCAAACATCTGATATTGAGGCCTGCCAGAGTATGCTCAAGTGA

>Glyma04g23560.2   sequence type=CDS   gene model=Glyma04g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGGGGGAGGACCTACTCCTACGCTGGTCAAGGCCGAGGTTCCGTGGTCTGCTAGAAGGGGAAGTCTATCTGAAAAGGATCGCGTCATAAAAACTGTGAAAGGAATACTGAATAAGTTGACTCCTGAAAAATTTGATATCCTGAAGGGTCAGTTAATCGATTCTGGCATTACATCAGCTGACATCTTAAAGGATGTCATTTCACTTATTTTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGCTCTGTTCTGATCTAAATGAAAAGTTGCCTCCATTCCCATCTGAAGACCCTGGTGGGAAAGAAATCACCTTTAAGAGAGTGCTCTTGAATAATTGCCAGGAGGCATTTGAAGGTGCTGAAAATCTGAGGGAGGAACTAAAAAGGATGACTGCCCCTGAGCAGGAGATGGAGCGTATGGACAAGGAAAGGCTGCTCAAGCTTCGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCATGTTTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATTGGCAAGCAGCTTGATGAAAGTCTTAAATCGCGGCGTATAAATGACGTTTACTTTAGCCGATTGAAAGAATTAAGCTCAAACCTACAACTTGTACCCCGACTTAGGTTCATGATTCGGGATGTTATAGAGTTGCGTGCTAGTAACTGGGTTCCTAGACGCGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGATTGCGGCCAGGTGCAACTGCAAGTATGAGAAATCCCCGTGGTGGTGTTCAAGGAAATGCCAGCTCTGGGGGTTTTCCTATTGCCCGACCTGGTGCAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGATTTGATAATGGCAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGATTTGCCAGGTGTTCAAGCTGCTGGACAGAGCAACTCTGCTTTACTTTCCAAGTCCACGACCCTCAATTCAAAACTGCTACCTCAAGGTAGTGGTGGTATTATAAGTGGAAGAAATAGTGCCCTAGTACATGGAGGTGGTACAAACTTTGGTTTAGGACCTGAGGCAGCACCTCAACTCTCTTCACCTGCTAAAACAGCCACTCCTGTTCCTGTATCCTCTGAGAAGCCACAACATCCAGCTGCAAGATTGAATACTGATAATCTTCGCTGCAGAACTGTCTCTCTTCTAGAAGAATATTTCAGTGTTCAGCTTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTTGCCAATCTCATTGAGTATCTGTATATTAAGAAGATTCTTACCCCTATAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTACTGGATGATATTGGTATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGAAAACTAATTTTGGCTGGGGGATTGGATTGTAAGCTGGTGAGAGAGATTCTCAAGAAGGTGGATGATGGCATGTTCCAGAGAGCAATATTTGACAGTGTGGTGGGGGCCATTAGATCTGCATCTGGGCAAGCCGTGTTGGATGCTCAAACATCTGATATTGAGGCCTGCCAGAGTATGCTCAAGTGA

Predicted protein sequences of Glyma04g23560

Limit To All Plant Sequences

>Glyma04g23560.1   sequence type=predicted peptide   gene model=Glyma04g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQGDPTVLSLRPGGGRGGGSRLFGHSSSSLSADLPLCRPHAYFSLKTRDSRFEGHERVRYSRDQLLQLQEAVEVPDDILKIKQDIEAEIFGENPSWGRAESNLPHQLQNRYSEPDNRDWRGHSGQLPANSDERSWENLRDNREFGNRQQDASQVNRHDQLNSQFARTQISSMQGGGPTPTLVKAEVPWSARRGSLSEKDRVIKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEDPGGKEITFKRVLLNNCQEAFEGAENLREELKRMTAPEQEMERMDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSMFCPVEENVEAICQFFNTIGKQLDESLKSRRINDVYFSRLKELSSNLQLVPRLRFMIRDVIELRASNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNPRGGVQGNASSGGFPIARPGAGGLMPGMPGTRKMPGMPGFDNGNWEMPKTRSMPRGDLPGVQAAGQSNSALLSKSTTLNSKLLPQGSGGIISGRNSALVHGGGTNFGLGPEAAPQLSSPAKTATPVPVSSEKPQHPAARLNTDNLRCRTVSLLEEYFSVQLLEEALQCVEELKSPSYHPEVVKEAISLALDKSPPCVEPVANLIEYLYIKKILTPIDIGTGCLLFGSLLDDIGIDLPKAPSNFGEIIGKLILAGGLDCKLVREILKKVDDGMFQRAIFDSVVGAIRSASGQAVLDAQTSDIEACQSMLK*

>Glyma04g23560.2   sequence type=predicted peptide   gene model=Glyma04g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGGGPTPTLVKAEVPWSARRGSLSEKDRVIKTVKGILNKLTPEKFDILKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEDPGGKEITFKRVLLNNCQEAFEGAENLREELKRMTAPEQEMERMDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSMFCPVEENVEAICQFFNTIGKQLDESLKSRRINDVYFSRLKELSSNLQLVPRLRFMIRDVIELRASNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASMRNPRGGVQGNASSGGFPIARPGAGGLMPGMPGTRKMPGMPGFDNGNWEMPKTRSMPRGDLPGVQAAGQSNSALLSKSTTLNSKLLPQGSGGIISGRNSALVHGGGTNFGLGPEAAPQLSSPAKTATPVPVSSEKPQHPAARLNTDNLRCRTVSLLEEYFSVQLLEEALQCVEELKSPSYHPEVVKEAISLALDKSPPCVEPVANLIEYLYIKKILTPIDIGTGCLLFGSLLDDIGIDLPKAPSNFGEIIGKLILAGGLDCKLVREILKKVDDGMFQRAIFDSVVGAIRSASGQAVLDAQTSDIEACQSMLK*

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