Glyma04g23536 - SoyBase

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Report for Sequence Feature Glyma04g23536

Feature Type:	gene_model
Chromosome:	Gm04
Start:	26756884
stop:	26758397
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g23536

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233A073	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A073 related cluster n=1 Tax=unknown RepID=UPI000233A073	SoyBase	E_val: 4.00E-69	ISS

Expression Patterns of Glyma04g23536

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g23536 not represented in the dataset	Glyma04g23536 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g23536 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g153800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g23536

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g23536

Limit To All Plant Sequences

>Glyma04g23536.2   sequence type=transcript   gene model=Glyma04g23536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGACCTTCATGTTCAAGGTAGTCCCTGGCAATACATGTCATTTTGTTTCTCAGTTATCTCAAGACGAGGCATTAATCAATTCTATTGTTGCTAAGCTTCCTACCTTTGACCTTCAGCAATGCTTCTCTACCACTGCTGAGTCTAATCCACTTTTATCAGGATCCATTACACCAGCTAAGCACAATCTCGTCCTATCTAATACTCAATTGGATGATATACCATTTGAAGATTTATCATCCATACAACTATCCTCAATCGGGGTGACCAAACATATCAAGATTGAGTGATGACGACGAAGCACTATTGAAGAACTTTTTTGTTTGTTATGTGGCAAACTATTTATATTTTGAGTATTTGGATGAATGTATTTAAGTACTTTGGTTAATCTGAACATTTTATCACTCGTCTTGTGATAATATGATAAAATGACACATAAAACAAGTGTGGATTGTGTTGATAACTTCATGCAATGTTTAATATTGATGAGTTAAGTACA

Coding sequences of Glyma04g23536

Limit To All Plant Sequences

>Glyma04g23536.1   sequence type=CDS   gene model=Glyma04g23536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAAGTCAGCTAACAATGATTCACTGTACCCAAAGTGGAAACCAAATTTCGGGGTCTTCATTGTATTCTGTTGGAGATCGCTTTATGCATAATGCAAAAATGATATATTTTGATGAAGTCAGCAAAGTGAAAAAGCAATGCTTCTCTACCACTGCTGAGTCTAATCCACTTTTATCAGGATCCATTACACCAGCTAAGCACAATCTCGTCCTATCTAATACTCAATTGGATGATATACCATTTGAAGATTTATCATCCATACAACTATCCTCAATCGGGGTGACCAAACATATCAAGATTGAGTGA

>Glyma04g23536.2   sequence type=CDS   gene model=Glyma04g23536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGGTAGTCCCTGGCAATACATGTCATTTTGTTTCTCAGTTATCTCAAGACGAGGCATTAATCAATTCTATTGTTGCTAAGCTTCCTACCTTTGACCTTCAGCAATGCTTCTCTACCACTGCTGAGTCTAATCCACTTTTATCAGGATCCATTACACCAGCTAAGCACAATCTCGTCCTATCTAATACTCAATTGGATGATATACCATTTGAAGATTTATCATCCATACAACTATCCTCAATCGGGGTGACCAAACATATCAAGATTGAGTGA

Predicted protein sequences of Glyma04g23536

Limit To All Plant Sequences

>Glyma04g23536.1   sequence type=predicted peptide   gene model=Glyma04g23536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSQLTMIHCTQSGNQISGSSLYSVGDRFMHNAKMIYFDEVSKVKKQCFSTTAESNPLLSGSITPAKHNLVLSNTQLDDIPFEDLSSIQLSSIGVTKHIKIE*

>Glyma04g23536.2   sequence type=predicted peptide   gene model=Glyma04g23536   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKVVPGNTCHFVSQLSQDEALINSIVAKLPTFDLQQCFSTTAESNPLLSGSITPAKHNLVLSNTQLDDIPFEDLSSIQLSSIGVTKHIKIE*

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